miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25137 3' -54.7 NC_005336.1 + 74024 0.66 0.930267
Target:  5'- cGCUCGCgGAG----ACGCCgUCCGUCu -3'
miRNA:   3'- aCGAGUGgCUCcacaUGUGG-AGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 90701 0.66 0.930267
Target:  5'- gGCU-GCCGAGcGUGUACGCaCUCaCGc- -3'
miRNA:   3'- aCGAgUGGCUC-CACAUGUG-GAG-GUag -5'
25137 3' -54.7 NC_005336.1 + 48137 0.66 0.924868
Target:  5'- cUGCUCACCGA------CGCCUCCcgCg -3'
miRNA:   3'- -ACGAGUGGCUccacauGUGGAGGuaG- -5'
25137 3' -54.7 NC_005336.1 + 22326 0.66 0.924868
Target:  5'- cGCUCGCCGAuccauugcgccGaGUGcACGCUUCCGc- -3'
miRNA:   3'- aCGAGUGGCU-----------C-CACaUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 24367 0.66 0.924868
Target:  5'- aUGCUCGCgGAGGagaugagcgUGUACACgUaCC-UCg -3'
miRNA:   3'- -ACGAGUGgCUCC---------ACAUGUGgA-GGuAG- -5'
25137 3' -54.7 NC_005336.1 + 109786 0.66 0.919219
Target:  5'- cGCgCACCGAGGUagAgACCgucugccacgCCAUCg -3'
miRNA:   3'- aCGaGUGGCUCCAcaUgUGGa---------GGUAG- -5'
25137 3' -54.7 NC_005336.1 + 49459 0.66 0.913322
Target:  5'- cGCUCACCGAG------ACCUCgGUCa -3'
miRNA:   3'- aCGAGUGGCUCcacaugUGGAGgUAG- -5'
25137 3' -54.7 NC_005336.1 + 70066 0.66 0.913322
Target:  5'- gUGUcCAgCGuGGUGUACGUCUCCGUg -3'
miRNA:   3'- -ACGaGUgGCuCCACAUGUGGAGGUAg -5'
25137 3' -54.7 NC_005336.1 + 24436 0.67 0.900789
Target:  5'- cUGCUCucgGCCGuGGagacgcugcUGcgGCGCUUCCGUCg -3'
miRNA:   3'- -ACGAG---UGGCuCC---------ACa-UGUGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 128804 0.67 0.894157
Target:  5'- cUGCUCAUCGuGGacgACACCUUCGc- -3'
miRNA:   3'- -ACGAGUGGCuCCacaUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 69485 0.67 0.887287
Target:  5'- cGCUgCGCgaCGAGGaggACugCUCCGUCg -3'
miRNA:   3'- aCGA-GUG--GCUCCacaUGugGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 44025 0.67 0.883052
Target:  5'- cGC-CGCCGAGGucgUagaauucaucaggcgGUACGCCUCCGg- -3'
miRNA:   3'- aCGaGUGGCUCC---A---------------CAUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 99035 0.67 0.872847
Target:  5'- gUGCUgCccuCCGcGccGUGCGCCUCCAUCg -3'
miRNA:   3'- -ACGA-Gu--GGCuCcaCAUGUGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 109213 0.68 0.849518
Target:  5'- cGCuUCACCGAGGcUG-ACcUCUUCGUCg -3'
miRNA:   3'- aCG-AGUGGCUCC-ACaUGuGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 91349 0.68 0.849518
Target:  5'- gGUcgCGCCuGAGGUaGUgaGCACCUCCAg- -3'
miRNA:   3'- aCGa-GUGG-CUCCA-CA--UGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 61052 0.68 0.832926
Target:  5'- aGCUCcgcgaccaGCCGGcGGUaGUGCGCCUCCn-- -3'
miRNA:   3'- aCGAG--------UGGCU-CCA-CAUGUGGAGGuag -5'
25137 3' -54.7 NC_005336.1 + 51919 0.68 0.832926
Target:  5'- aGCUCGCCGccgcGGg--GCACCacuacgacUCCAUCg -3'
miRNA:   3'- aCGAGUGGCu---CCacaUGUGG--------AGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 139686 0.69 0.815574
Target:  5'- cGCggCugCGGGGUGc-CGCCUCCGc- -3'
miRNA:   3'- aCGa-GugGCUCCACauGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 92806 0.69 0.815574
Target:  5'- -cUUC-CCGGGGUGUGCAgCaCCAUCu -3'
miRNA:   3'- acGAGuGGCUCCACAUGUgGaGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 10145 0.69 0.815574
Target:  5'- cGCUCGCgGcGGUGUGCACgUCg--- -3'
miRNA:   3'- aCGAGUGgCuCCACAUGUGgAGguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.