miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25137 3' -54.7 NC_005336.1 + 10145 0.69 0.815574
Target:  5'- cGCUCGCgGcGGUGUGCACgUCg--- -3'
miRNA:   3'- aCGAGUGgCuCCACAUGUGgAGguag -5'
25137 3' -54.7 NC_005336.1 + 105577 0.69 0.797527
Target:  5'- cGCgucaccucggCGCCGGGccggcggcacGUGUGCACgUCCGUCu -3'
miRNA:   3'- aCGa---------GUGGCUC----------CACAUGUGgAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 96168 0.69 0.787332
Target:  5'- -aCUCGCCGGGcgucggcGUGUcgaGCACCUCCAc- -3'
miRNA:   3'- acGAGUGGCUC-------CACA---UGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 14157 0.69 0.778858
Target:  5'- gGCUCcuCCGGGGgcacGUACACCaugCCGUa -3'
miRNA:   3'- aCGAGu-GGCUCCa---CAUGUGGa--GGUAg -5'
25137 3' -54.7 NC_005336.1 + 32343 0.69 0.778858
Target:  5'- aGCUCAgCGccGcGcGCGCCUCCGUCa -3'
miRNA:   3'- aCGAGUgGCucCaCaUGUGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 129221 0.7 0.759641
Target:  5'- cGCUCAaguCCGuGcGUauaucGUGCACCUUCAUCg -3'
miRNA:   3'- aCGAGU---GGCuC-CA-----CAUGUGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 114472 0.7 0.729958
Target:  5'- gUGUUCcUgGAGGUGgGCGCCUCCGa- -3'
miRNA:   3'- -ACGAGuGgCUCCACaUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 57247 0.7 0.729958
Target:  5'- aGCUCACCGAGGaa-ACGCC--CAUCg -3'
miRNA:   3'- aCGAGUGGCUCCacaUGUGGagGUAG- -5'
25137 3' -54.7 NC_005336.1 + 118222 0.71 0.713785
Target:  5'- cGCUCaccgcgcugacggcgGCCGuGGUGUGCGCgaucgCCGUCg -3'
miRNA:   3'- aCGAG---------------UGGCuCCACAUGUGga---GGUAG- -5'
25137 3' -54.7 NC_005336.1 + 97321 0.72 0.658061
Target:  5'- cGCUCGgCGAGG---GCACCUCCGc- -3'
miRNA:   3'- aCGAGUgGCUCCacaUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 93973 0.72 0.658061
Target:  5'- --gUCGCCgGAGGUG-GCGCCUCCAc- -3'
miRNA:   3'- acgAGUGG-CUCCACaUGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 38199 0.72 0.647629
Target:  5'- cGgUCAcgcCCGAGGcGUACGCCUUCAUg -3'
miRNA:   3'- aCgAGU---GGCUCCaCAUGUGGAGGUAg -5'
25137 3' -54.7 NC_005336.1 + 64224 0.72 0.626736
Target:  5'- aGCgagCGCCGc-GUGUACACCUUCAUg -3'
miRNA:   3'- aCGa--GUGGCucCACAUGUGGAGGUAg -5'
25137 3' -54.7 NC_005336.1 + 63313 0.72 0.626736
Target:  5'- cGCUUcgcgcCCGAGGccgugcccggGUGCACCUUCAUCa -3'
miRNA:   3'- aCGAGu----GGCUCCa---------CAUGUGGAGGUAG- -5'
25137 3' -54.7 NC_005336.1 + 114011 0.72 0.60586
Target:  5'- aGCUCgucGCCGAGGUGgcCAUCUUCGa- -3'
miRNA:   3'- aCGAG---UGGCUCCACauGUGGAGGUag -5'
25137 3' -54.7 NC_005336.1 + 8851 0.74 0.523746
Target:  5'- gGCUCACCGAGGgcaGgACCUCCu-- -3'
miRNA:   3'- aCGAGUGGCUCCacaUgUGGAGGuag -5'
25137 3' -54.7 NC_005336.1 + 120105 0.75 0.44624
Target:  5'- gUGCUCGCCGGcGUGcaccccagGCACCUCCcgCg -3'
miRNA:   3'- -ACGAGUGGCUcCACa-------UGUGGAGGuaG- -5'
25137 3' -54.7 NC_005336.1 + 80131 0.77 0.350273
Target:  5'- cUGCUCACCGAGGUGUucacgcuagagaaGCGgCUCUcUCu -3'
miRNA:   3'- -ACGAGUGGCUCCACA-------------UGUgGAGGuAG- -5'
25137 3' -54.7 NC_005336.1 + 61085 0.79 0.298448
Target:  5'- aGCUCAUCgggcaugaugGAGGUGUACACCUCgGUg -3'
miRNA:   3'- aCGAGUGG----------CUCCACAUGUGGAGgUAg -5'
25137 3' -54.7 NC_005336.1 + 78699 1.1 0.0026
Target:  5'- cUGCUCACCGAGGUGUACACCUCCAUCa -3'
miRNA:   3'- -ACGAGUGGCUCCACAUGUGGAGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.