miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25137 5' -62 NC_005336.1 + 68520 0.66 0.610946
Target:  5'- uGGGCUGGuuuGGCGCGCaGCUggGCgaGGCc -3'
miRNA:   3'- -CUCGACCu--CCGCGUGaUGG--CGg-CCGa -5'
25137 5' -62 NC_005336.1 + 108684 0.66 0.610946
Target:  5'- -uGCUGGuggagucggacGGGUGCAUgGCCGUgGGCc -3'
miRNA:   3'- cuCGACC-----------UCCGCGUGaUGGCGgCCGa -5'
25137 5' -62 NC_005336.1 + 9544 0.66 0.610946
Target:  5'- cGGGCaGGcGGCGCA--GCCGCgcgCGGCg -3'
miRNA:   3'- -CUCGaCCuCCGCGUgaUGGCG---GCCGa -5'
25137 5' -62 NC_005336.1 + 70939 0.66 0.610946
Target:  5'- gGGGaCUGGaAGG-GCACgccggUGCCGCCGcGCg -3'
miRNA:   3'- -CUC-GACC-UCCgCGUG-----AUGGCGGC-CGa -5'
25137 5' -62 NC_005336.1 + 59169 0.66 0.610946
Target:  5'- cGGCUGGAuGGUGCACaaGgCGgCGGCc -3'
miRNA:   3'- cUCGACCU-CCGCGUGa-UgGCgGCCGa -5'
25137 5' -62 NC_005336.1 + 34205 0.66 0.610946
Target:  5'- ----cGGAcGUGCACacgUGCCGCCGGCc -3'
miRNA:   3'- cucgaCCUcCGCGUG---AUGGCGGCCGa -5'
25137 5' -62 NC_005336.1 + 99910 0.66 0.609947
Target:  5'- cGAGCggUGGAGcgcgaccGCGCGCUGaugCGgCGGCUg -3'
miRNA:   3'- -CUCG--ACCUC-------CGCGUGAUg--GCgGCCGA- -5'
25137 5' -62 NC_005336.1 + 52968 0.66 0.604953
Target:  5'- gGGGUUGGAGGCGgACUucgaggcggacaacaAgCGCCuGCg -3'
miRNA:   3'- -CUCGACCUCCGCgUGA---------------UgGCGGcCGa -5'
25137 5' -62 NC_005336.1 + 134133 0.66 0.600962
Target:  5'- -cGCUGGcGGCGCucccgGCCGCggacaGGCUc -3'
miRNA:   3'- cuCGACCuCCGCGuga--UGGCGg----CCGA- -5'
25137 5' -62 NC_005336.1 + 107687 0.66 0.600962
Target:  5'- cGAGCUa-AGGcCGCACgugGCCuGCCGGUc -3'
miRNA:   3'- -CUCGAccUCC-GCGUGa--UGG-CGGCCGa -5'
25137 5' -62 NC_005336.1 + 116905 0.66 0.600962
Target:  5'- -uGCUGGuuGGGCGUgcGCUcCUGCgCGGCg -3'
miRNA:   3'- cuCGACC--UCCGCG--UGAuGGCG-GCCGa -5'
25137 5' -62 NC_005336.1 + 96256 0.66 0.600962
Target:  5'- uGAGCUGGAagcGGaUGCGCUGCaGCCuuaGCUg -3'
miRNA:   3'- -CUCGACCU---CC-GCGUGAUGgCGGc--CGA- -5'
25137 5' -62 NC_005336.1 + 107506 0.66 0.600962
Target:  5'- -uGCUGGAGGUcCAUgACCaGCaCGGCa -3'
miRNA:   3'- cuCGACCUCCGcGUGaUGG-CG-GCCGa -5'
25137 5' -62 NC_005336.1 + 68917 0.66 0.600962
Target:  5'- cGAGCUcGGucGCGCGCa--CGaCCGGCa -3'
miRNA:   3'- -CUCGA-CCucCGCGUGaugGC-GGCCGa -5'
25137 5' -62 NC_005336.1 + 89732 0.66 0.590999
Target:  5'- aGAGCUcucGAcuauGGUGCGCUGCCGCaaGGCc -3'
miRNA:   3'- -CUCGAc--CU----CCGCGUGAUGGCGg-CCGa -5'
25137 5' -62 NC_005336.1 + 83208 0.66 0.590999
Target:  5'- aGGGCgcgcGGAcgacgGGCGCGCggcGCUGCCgcGGCUg -3'
miRNA:   3'- -CUCGa---CCU-----CCGCGUGa--UGGCGG--CCGA- -5'
25137 5' -62 NC_005336.1 + 130617 0.66 0.590999
Target:  5'- -uGgUGGAGcGCGCGCUGCgcgCGCUGcGCg -3'
miRNA:   3'- cuCgACCUC-CGCGUGAUG---GCGGC-CGa -5'
25137 5' -62 NC_005336.1 + 77183 0.66 0.590999
Target:  5'- aGAGCgcgUGGuAGGCGCccaGCaGCCGCgGGUc -3'
miRNA:   3'- -CUCG---ACC-UCCGCG---UGaUGGCGgCCGa -5'
25137 5' -62 NC_005336.1 + 123188 0.66 0.590999
Target:  5'- -uGUUGGAGGCGgACgcgcGCgCGCUGGaCUg -3'
miRNA:   3'- cuCGACCUCCGCgUGa---UG-GCGGCC-GA- -5'
25137 5' -62 NC_005336.1 + 125690 0.66 0.590999
Target:  5'- aGGGCcuGAuGGCGUACUGCCGCaCGuGCc -3'
miRNA:   3'- -CUCGacCU-CCGCGUGAUGGCG-GC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.