miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25138 5' -57.4 NC_005336.1 + 81197 0.66 0.854478
Target:  5'- cGCCGugcugcgggGGGACuCCGGCGUCGAcuucaagugccuGGUUAa -3'
miRNA:   3'- cUGGU---------UCCUGcGGUCGCAGCU------------CCAGU- -5'
25138 5' -57.4 NC_005336.1 + 38088 0.66 0.854478
Target:  5'- aGCgAAGcguGugGCuCAGCGUCGAGGa-- -3'
miRNA:   3'- cUGgUUC---CugCG-GUCGCAGCUCCagu -5'
25138 5' -57.4 NC_005336.1 + 103728 0.66 0.846597
Target:  5'- cGACCA-GGACGCgAGCGUgcuGGUg- -3'
miRNA:   3'- -CUGGUuCCUGCGgUCGCAgcuCCAgu -5'
25138 5' -57.4 NC_005336.1 + 47667 0.66 0.838522
Target:  5'- -cUCGAGGAcgcggagaagcuCGCCAGCGaCGAGGa-- -3'
miRNA:   3'- cuGGUUCCU------------GCGGUCGCaGCUCCagu -5'
25138 5' -57.4 NC_005336.1 + 97657 0.66 0.838522
Target:  5'- --gCGAGGccgcGCGCCgcGGCGccUCGGGGUCGc -3'
miRNA:   3'- cugGUUCC----UGCGG--UCGC--AGCUCCAGU- -5'
25138 5' -57.4 NC_005336.1 + 94194 0.66 0.838522
Target:  5'- gGugCGGGGuuguCGCCGGaCGaCGAGGUa- -3'
miRNA:   3'- -CugGUUCCu---GCGGUC-GCaGCUCCAgu -5'
25138 5' -57.4 NC_005336.1 + 63467 0.66 0.837704
Target:  5'- uGACCAAGGaggacggGCGCCAGCGgcccgcgCGcacGGUg- -3'
miRNA:   3'- -CUGGUUCC-------UGCGGUCGCa------GCu--CCAgu -5'
25138 5' -57.4 NC_005336.1 + 35026 0.66 0.830262
Target:  5'- cGCgAAGGGCucGUCGGUcUCGGGGUCGa -3'
miRNA:   3'- cUGgUUCCUG--CGGUCGcAGCUCCAGU- -5'
25138 5' -57.4 NC_005336.1 + 128572 0.66 0.821821
Target:  5'- uGAUCAAGcACGCCGGCGcCGuGGa-- -3'
miRNA:   3'- -CUGGUUCcUGCGGUCGCaGCuCCagu -5'
25138 5' -57.4 NC_005336.1 + 49374 0.66 0.816674
Target:  5'- cGCCAAGGACGCC-GCcgagacggccgaccaGUCGGuGGUg- -3'
miRNA:   3'- cUGGUUCCUGCGGuCG---------------CAGCU-CCAgu -5'
25138 5' -57.4 NC_005336.1 + 46185 0.66 0.81321
Target:  5'- cGACgCAGccGCGCCAGCGccuccaCGAGGUCc -3'
miRNA:   3'- -CUG-GUUccUGCGGUCGCa-----GCUCCAGu -5'
25138 5' -57.4 NC_005336.1 + 32799 0.67 0.786427
Target:  5'- aGCCcauGAGcGcCGCCAGCGUC-AGGUCc -3'
miRNA:   3'- cUGG---UUC-CuGCGGUCGCAGcUCCAGu -5'
25138 5' -57.4 NC_005336.1 + 125485 0.67 0.786427
Target:  5'- -uCCGAGGACGCguGCGUgcgcuucacgaaCGAGcUCAu -3'
miRNA:   3'- cuGGUUCCUGCGguCGCA------------GCUCcAGU- -5'
25138 5' -57.4 NC_005336.1 + 96707 0.67 0.767868
Target:  5'- gGACUAGGGGggaguCGgCAGUGcCGGGGUCu -3'
miRNA:   3'- -CUGGUUCCU-----GCgGUCGCaGCUCCAGu -5'
25138 5' -57.4 NC_005336.1 + 61221 0.67 0.767868
Target:  5'- uGACCuc-GACGCUGGCGUCcuuGGUCu -3'
miRNA:   3'- -CUGGuucCUGCGGUCGCAGcu-CCAGu -5'
25138 5' -57.4 NC_005336.1 + 114018 0.67 0.767868
Target:  5'- cGCCGAGGugGCCAucuuCGaccgCGAGGcCAa -3'
miRNA:   3'- cUGGUUCCugCGGUc---GCa---GCUCCaGU- -5'
25138 5' -57.4 NC_005336.1 + 121327 0.67 0.758403
Target:  5'- cGCCAcggAGGugcucGCGCCGGCGgCGAGGg-- -3'
miRNA:   3'- cUGGU---UCC-----UGCGGUCGCaGCUCCagu -5'
25138 5' -57.4 NC_005336.1 + 126410 0.67 0.758403
Target:  5'- cGCCGGcGGGCGCgAGCag-GAGGUCAu -3'
miRNA:   3'- cUGGUU-CCUGCGgUCGcagCUCCAGU- -5'
25138 5' -57.4 NC_005336.1 + 10473 0.68 0.748828
Target:  5'- -gUCGGGGAUG-UAGCaGUCGGGGUCGu -3'
miRNA:   3'- cuGGUUCCUGCgGUCG-CAGCUCCAGU- -5'
25138 5' -57.4 NC_005336.1 + 109992 0.68 0.72938
Target:  5'- cGCCGcGGACGaugaAGUaGUCGAGGUCGu -3'
miRNA:   3'- cUGGUuCCUGCgg--UCG-CAGCUCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.