miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25140 3' -57.5 NC_005336.1 + 81799 0.66 0.829687
Target:  5'- -cCGUGaacaggaUGGUGCaguacccguugGCGAaGGCGCCGCg -3'
miRNA:   3'- uuGCACg------ACCACG-----------UGCUgCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 59166 0.66 0.829687
Target:  5'- cGACG-GCuggaUGGUGCACaaGGCGGCgGCCGu -3'
miRNA:   3'- -UUGCaCG----ACCACGUG--CUGCUG-CGGUg -5'
25140 3' -57.5 NC_005336.1 + 136628 0.66 0.829687
Target:  5'- uGCGgcaGCUGGa--GCGGCuGCGCCGCg -3'
miRNA:   3'- uUGCa--CGACCacgUGCUGcUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 136628 0.66 0.829687
Target:  5'- uGCGgcaGCUGGa--GCGGCuGCGCCGCg -3'
miRNA:   3'- uUGCa--CGACCacgUGCUGcUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 102603 0.66 0.829687
Target:  5'- -cCGUGCccgcGG-GCGCgGACGugGCCGa -3'
miRNA:   3'- uuGCACGa---CCaCGUG-CUGCugCGGUg -5'
25140 3' -57.5 NC_005336.1 + 121305 0.66 0.829687
Target:  5'- ----aGC-GcGUGCACGACGcacucuGCGCCACg -3'
miRNA:   3'- uugcaCGaC-CACGUGCUGC------UGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 46673 0.66 0.828843
Target:  5'- cACGUGCUcgagcacGGUGauccCGAUGAUGaCCACg -3'
miRNA:   3'- uUGCACGA-------CCACgu--GCUGCUGC-GGUG- -5'
25140 3' -57.5 NC_005336.1 + 129642 0.66 0.821163
Target:  5'- cGAgGUGCUcucGCACGACGugcacacCGCCGCg -3'
miRNA:   3'- -UUgCACGAccaCGUGCUGCu------GCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 45192 0.66 0.821163
Target:  5'- cAUGUGgaccaaGGUGCugGACucCGCCGCg -3'
miRNA:   3'- uUGCACga----CCACGugCUGcuGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 81102 0.66 0.821163
Target:  5'- ---uUGC-GGUGCACGcgcGCGGgGCCGCc -3'
miRNA:   3'- uugcACGaCCACGUGC---UGCUgCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 72142 0.66 0.821163
Target:  5'- cGCGgagacGCUGGUguugcGCGCGGCGcgcgagcCGCCGCc -3'
miRNA:   3'- uUGCa----CGACCA-----CGUGCUGCu------GCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 80277 0.66 0.821163
Target:  5'- cACGUgGCUGGcGCGCuucuggccCGGCGCCAUc -3'
miRNA:   3'- uUGCA-CGACCaCGUGcu------GCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 33179 0.66 0.821163
Target:  5'- cGCGUGCUc-UGCACGgugaGCGACuCCACg -3'
miRNA:   3'- uUGCACGAccACGUGC----UGCUGcGGUG- -5'
25140 3' -57.5 NC_005336.1 + 83209 0.66 0.821163
Target:  5'- gGGCGcGCggacgacgGGcGCGCGGCGcUGCCGCg -3'
miRNA:   3'- -UUGCaCGa-------CCaCGUGCUGCuGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 64442 0.66 0.818571
Target:  5'- -cCGcGC-GGUGCGCcugaacagccacgaGAUGACGCCGCc -3'
miRNA:   3'- uuGCaCGaCCACGUG--------------CUGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 75064 0.66 0.817704
Target:  5'- cGCGUGUgcgcagagagGUACcGCGACGCCACg -3'
miRNA:   3'- uUGCACGacca------CGUGcUGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 122523 0.66 0.812464
Target:  5'- cAGCgGUGCg---GCGCGugGACGCgACc -3'
miRNA:   3'- -UUG-CACGaccaCGUGCugCUGCGgUG- -5'
25140 3' -57.5 NC_005336.1 + 129180 0.66 0.812464
Target:  5'- cGACGcGgaGG-GCGCGcGCGcCGCCGCg -3'
miRNA:   3'- -UUGCaCgaCCaCGUGC-UGCuGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 22537 0.66 0.812464
Target:  5'- cACGcucggGCUGGUGCuCGAgGACuaCCGCg -3'
miRNA:   3'- uUGCa----CGACCACGuGCUgCUGc-GGUG- -5'
25140 3' -57.5 NC_005336.1 + 28712 0.66 0.812464
Target:  5'- gAGCGcGUUGGUGUccuUGACGcCGUCGCa -3'
miRNA:   3'- -UUGCaCGACCACGu--GCUGCuGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.