miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25140 3' -57.5 NC_005336.1 + 38368 0.7 0.574794
Target:  5'- gGGCGUGCUcG-GCAacGCGGCGCCGCu -3'
miRNA:   3'- -UUGCACGAcCaCGUgcUGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 129795 0.71 0.514713
Target:  5'- uAGCgGUGCUGGUGCGCucGCG-CGCgGCg -3'
miRNA:   3'- -UUG-CACGACCACGUGc-UGCuGCGgUG- -5'
25140 3' -57.5 NC_005336.1 + 19756 0.71 0.514713
Target:  5'- cGCGcGCUcGGUGCcgcccgcggcgACGGCGGCGCCGa -3'
miRNA:   3'- uUGCaCGA-CCACG-----------UGCUGCUGCGGUg -5'
25140 3' -57.5 NC_005336.1 + 71498 0.71 0.534494
Target:  5'- uACGUGCUcGUGgGCGgcaACGugGCCAUg -3'
miRNA:   3'- uUGCACGAcCACgUGC---UGCugCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 133971 0.71 0.534494
Target:  5'- uGCGccgGCUGGccGCGCGcGCGGCGCCGg -3'
miRNA:   3'- uUGCa--CGACCa-CGUGC-UGCUGCGGUg -5'
25140 3' -57.5 NC_005336.1 + 92802 0.71 0.544485
Target:  5'- -cCGUcGCUGG-GCGCguguucGACGACGCCAa -3'
miRNA:   3'- uuGCA-CGACCaCGUG------CUGCUGCGGUg -5'
25140 3' -57.5 NC_005336.1 + 99708 0.7 0.554536
Target:  5'- --aGUGuCUGGUGCucuGCGACGAgGCgGCc -3'
miRNA:   3'- uugCAC-GACCACG---UGCUGCUgCGgUG- -5'
25140 3' -57.5 NC_005336.1 + 123601 0.7 0.554536
Target:  5'- gGACGUGCUcGUGaagucCGugGGCGCCAa -3'
miRNA:   3'- -UUGCACGAcCACgu---GCugCUGCGGUg -5'
25140 3' -57.5 NC_005336.1 + 97018 0.7 0.564641
Target:  5'- cGCGUGCgcacGCGCGGCGugGCCu- -3'
miRNA:   3'- uUGCACGaccaCGUGCUGCugCGGug -5'
25140 3' -57.5 NC_005336.1 + 52044 0.71 0.504935
Target:  5'- cGCGUGC-GuGUGCGCGACGGgccCGCgCGCg -3'
miRNA:   3'- uUGCACGaC-CACGUGCUGCU---GCG-GUG- -5'
25140 3' -57.5 NC_005336.1 + 126706 0.72 0.485625
Target:  5'- cGCGUGCacg-GCACG-CGGCGCCGCc -3'
miRNA:   3'- uUGCACGaccaCGUGCuGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 97464 0.72 0.457342
Target:  5'- uGACGUGCUcGUGCuCGACGA-GUCGCa -3'
miRNA:   3'- -UUGCACGAcCACGuGCUGCUgCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 71566 0.74 0.346151
Target:  5'- cAACGUGC-GcGUGCACGGCGGCGaCAUa -3'
miRNA:   3'- -UUGCACGaC-CACGUGCUGCUGCgGUG- -5'
25140 3' -57.5 NC_005336.1 + 42625 0.74 0.361946
Target:  5'- cGGCGUGCUc--GCGCG-CGGCGCCGCg -3'
miRNA:   3'- -UUGCACGAccaCGUGCuGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 68306 0.74 0.378236
Target:  5'- uGCGUGCUGGcgcGCGCGGCaGACGCagagGCg -3'
miRNA:   3'- uUGCACGACCa--CGUGCUG-CUGCGg---UG- -5'
25140 3' -57.5 NC_005336.1 + 39192 0.73 0.438985
Target:  5'- --gGUGCgcgUGGUGCACGGgaaggugcccucCGugGCCGCg -3'
miRNA:   3'- uugCACG---ACCACGUGCU------------GCugCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 133838 0.72 0.447194
Target:  5'- cGCG-GCUGGUGCGCcGCGACGuguucucCCGCu -3'
miRNA:   3'- uUGCaCGACCACGUGcUGCUGC-------GGUG- -5'
25140 3' -57.5 NC_005336.1 + 29585 0.72 0.448112
Target:  5'- cGCGUGCUgGGUGCGCuGCugcgGGCGCUGCg -3'
miRNA:   3'- uUGCACGA-CCACGUGcUG----CUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 13861 0.72 0.448112
Target:  5'- cACGU-C-GGUgucGCACGGCGGCGCCGCg -3'
miRNA:   3'- uUGCAcGaCCA---CGUGCUGCUGCGGUG- -5'
25140 3' -57.5 NC_005336.1 + 22420 0.72 0.457342
Target:  5'- gGACccGCUGGUGCugGACcgcggGGCGCuCACg -3'
miRNA:   3'- -UUGcaCGACCACGugCUG-----CUGCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.