miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25140 5' -58.7 NC_005336.1 + 10382 0.66 0.793278
Target:  5'- uCCGggaGGUCcacGC-GCGCGCCGGCGu- -3'
miRNA:   3'- -GGCa--CCAGca-CGuCGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 90445 0.66 0.793278
Target:  5'- gCCGgagcUGGUCacGC-GCGCGCgGGCGAUg -3'
miRNA:   3'- -GGC----ACCAGcaCGuCGCGUGgUCGCUA- -5'
25140 5' -58.7 NC_005336.1 + 87490 0.66 0.793278
Target:  5'- aCGUgauGGUCGUGUucAGCGaCACCuuguaGGUGAUg -3'
miRNA:   3'- gGCA---CCAGCACG--UCGC-GUGG-----UCGCUA- -5'
25140 5' -58.7 NC_005336.1 + 16868 0.66 0.793278
Target:  5'- gCGUGG----GCAGCGCGCgCAGCGu- -3'
miRNA:   3'- gGCACCagcaCGUCGCGUG-GUCGCua -5'
25140 5' -58.7 NC_005336.1 + 85244 0.66 0.793278
Target:  5'- gCgGUGGUUGgccacGUAcCGCACCAGCGu- -3'
miRNA:   3'- -GgCACCAGCa----CGUcGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 108710 0.66 0.793278
Target:  5'- gCCGUGGgCcUGCGGUaCACaCAGCGGa -3'
miRNA:   3'- -GGCACCaGcACGUCGcGUG-GUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 97646 0.66 0.793278
Target:  5'- gCCGUGGcacagCGagGCcGCGCGCC-GCGGc -3'
miRNA:   3'- -GGCACCa----GCa-CGuCGCGUGGuCGCUa -5'
25140 5' -58.7 NC_005336.1 + 9517 0.66 0.793278
Target:  5'- gCGUGGUCGcucGCAGCGacucugccacaGCCcGCGGc -3'
miRNA:   3'- gGCACCAGCa--CGUCGCg----------UGGuCGCUa -5'
25140 5' -58.7 NC_005336.1 + 85210 0.66 0.793278
Target:  5'- gCCGUguacgGGUCGcGCgAGCGCAgCAGCc-- -3'
miRNA:   3'- -GGCA-----CCAGCaCG-UCGCGUgGUCGcua -5'
25140 5' -58.7 NC_005336.1 + 54931 0.66 0.78423
Target:  5'- gCCG-GGUC-UGCGGCGUccGCCAcgaGCGGc -3'
miRNA:   3'- -GGCaCCAGcACGUCGCG--UGGU---CGCUa -5'
25140 5' -58.7 NC_005336.1 + 54180 0.66 0.78423
Target:  5'- cCCGggcgcGGUCG-GCGGCGCcgcgcgaCGGCGGa -3'
miRNA:   3'- -GGCa----CCAGCaCGUCGCGug-----GUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 64674 0.66 0.775048
Target:  5'- uCCGgcUGGUCcgcgcugGUGGCGCGCCcGGCGGa -3'
miRNA:   3'- -GGC--ACCAGca-----CGUCGCGUGG-UCGCUa -5'
25140 5' -58.7 NC_005336.1 + 26346 0.66 0.775048
Target:  5'- aCGcGGUCGccggGCGcGCGCGCC-GCGGa -3'
miRNA:   3'- gGCaCCAGCa---CGU-CGCGUGGuCGCUa -5'
25140 5' -58.7 NC_005336.1 + 40441 0.66 0.772269
Target:  5'- gCGUGcgcgcgacgcgcacGcCGgagGCGGCGCACgCAGCGAg -3'
miRNA:   3'- gGCAC--------------CaGCa--CGUCGCGUG-GUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 98456 0.66 0.766677
Target:  5'- aCCGUGGUgaCGcgGCGGCGUcugcgcuuuuuguuuCCGGCGGc -3'
miRNA:   3'- -GGCACCA--GCa-CGUCGCGu--------------GGUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 49946 0.66 0.765741
Target:  5'- ---cGGUCGgcGCAGCGCAUCuGCGc- -3'
miRNA:   3'- ggcaCCAGCa-CGUCGCGUGGuCGCua -5'
25140 5' -58.7 NC_005336.1 + 37694 0.66 0.765741
Target:  5'- gCGaaGUCcaGCAGCGcCGCCAGCGGg -3'
miRNA:   3'- gGCacCAGcaCGUCGC-GUGGUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 45850 0.66 0.765741
Target:  5'- aCGUGGauugCGUG-GGCgGCGCCGGCGc- -3'
miRNA:   3'- gGCACCa---GCACgUCG-CGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 133168 0.66 0.765741
Target:  5'- cUCGUGGaCGUGaugcuGCGCGCgGGCGc- -3'
miRNA:   3'- -GGCACCaGCACgu---CGCGUGgUCGCua -5'
25140 5' -58.7 NC_005336.1 + 99120 0.66 0.765741
Target:  5'- gCCGaGGaCGcGCAGCgGCACCGGCuGGUc -3'
miRNA:   3'- -GGCaCCaGCaCGUCG-CGUGGUCG-CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.