Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25140 | 5' | -58.7 | NC_005336.1 | + | 54180 | 0.66 | 0.78423 |
Target: 5'- cCCGggcgcGGUCG-GCGGCGCcgcgcgaCGGCGGa -3' miRNA: 3'- -GGCa----CCAGCaCGUCGCGug-----GUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 49946 | 0.66 | 0.765741 |
Target: 5'- ---cGGUCGgcGCAGCGCAUCuGCGc- -3' miRNA: 3'- ggcaCCAGCa-CGUCGCGUGGuCGCua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 98456 | 0.66 | 0.766677 |
Target: 5'- aCCGUGGUgaCGcgGCGGCGUcugcgcuuuuuguuuCCGGCGGc -3' miRNA: 3'- -GGCACCA--GCa-CGUCGCGu--------------GGUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 97646 | 0.66 | 0.793278 |
Target: 5'- gCCGUGGcacagCGagGCcGCGCGCC-GCGGc -3' miRNA: 3'- -GGCACCa----GCa-CGuCGCGUGGuCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 26346 | 0.66 | 0.775048 |
Target: 5'- aCGcGGUCGccggGCGcGCGCGCC-GCGGa -3' miRNA: 3'- gGCaCCAGCa---CGU-CGCGUGGuCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 85244 | 0.66 | 0.793278 |
Target: 5'- gCgGUGGUUGgccacGUAcCGCACCAGCGu- -3' miRNA: 3'- -GgCACCAGCa----CGUcGCGUGGUCGCua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 16868 | 0.66 | 0.793278 |
Target: 5'- gCGUGG----GCAGCGCGCgCAGCGu- -3' miRNA: 3'- gGCACCagcaCGUCGCGUG-GUCGCua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 87490 | 0.66 | 0.793278 |
Target: 5'- aCGUgauGGUCGUGUucAGCGaCACCuuguaGGUGAUg -3' miRNA: 3'- gGCA---CCAGCACG--UCGC-GUGG-----UCGCUA- -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 10382 | 0.66 | 0.793278 |
Target: 5'- uCCGggaGGUCcacGC-GCGCGCCGGCGu- -3' miRNA: 3'- -GGCa--CCAGca-CGuCGCGUGGUCGCua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 37694 | 0.66 | 0.765741 |
Target: 5'- gCGaaGUCcaGCAGCGcCGCCAGCGGg -3' miRNA: 3'- gGCacCAGcaCGUCGC-GUGGUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 91249 | 0.66 | 0.756317 |
Target: 5'- aCGUgcGGUCG-GC-GCGCAUCAGCa-- -3' miRNA: 3'- gGCA--CCAGCaCGuCGCGUGGUCGcua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 88402 | 0.66 | 0.756317 |
Target: 5'- aCGcgGGUCGcgagGCAGCGCcauguuCCAGcCGGUg -3' miRNA: 3'- gGCa-CCAGCa---CGUCGCGu-----GGUC-GCUA- -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 90445 | 0.66 | 0.793278 |
Target: 5'- gCCGgagcUGGUCacGC-GCGCGCgGGCGAUg -3' miRNA: 3'- -GGC----ACCAGcaCGuCGCGUGgUCGCUA- -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 131878 | 0.66 | 0.745828 |
Target: 5'- gCUGUGGUCGcGCAGgcucucgagcaCGCGcuggacgccgggcCCAGCGAg -3' miRNA: 3'- -GGCACCAGCaCGUC-----------GCGU-------------GGUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 85210 | 0.66 | 0.793278 |
Target: 5'- gCCGUguacgGGUCGcGCgAGCGCAgCAGCc-- -3' miRNA: 3'- -GGCA-----CCAGCaCG-UCGCGUgGUCGcua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 108710 | 0.66 | 0.793278 |
Target: 5'- gCCGUGGgCcUGCGGUaCACaCAGCGGa -3' miRNA: 3'- -GGCACCaGcACGUCGcGUG-GUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 19683 | 0.66 | 0.756317 |
Target: 5'- gCCGcgGGagGUGCcuggGGUGCacGCCGGCGAg -3' miRNA: 3'- -GGCa-CCagCACG----UCGCG--UGGUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 67986 | 0.66 | 0.756317 |
Target: 5'- aCGUGGUCGcgGCcGCGC-CgGGCGc- -3' miRNA: 3'- gGCACCAGCa-CGuCGCGuGgUCGCua -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 30808 | 0.66 | 0.745828 |
Target: 5'- ---aGGUaGUGCGcgaccgcgcgggcGCGCACCAGCGGc -3' miRNA: 3'- ggcaCCAgCACGU-------------CGCGUGGUCGCUa -5' |
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25140 | 5' | -58.7 | NC_005336.1 | + | 94952 | 0.66 | 0.746786 |
Target: 5'- cCCGcGGgcgCGccgGCGGCGaCugCGGCGAg -3' miRNA: 3'- -GGCaCCa--GCa--CGUCGC-GugGUCGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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