miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25140 5' -58.7 NC_005336.1 + 77443 1.06 0.002116
Target:  5'- gCCGUGGUCGUGCAGCGCACCAGCGAUc -3'
miRNA:   3'- -GGCACCAGCACGUCGCGUGGUCGCUA- -5'
25140 5' -58.7 NC_005336.1 + 59815 0.77 0.23461
Target:  5'- -gGUGGgcggcgaugacgcCGUGCGGCGCGCCAGCGu- -3'
miRNA:   3'- ggCACCa------------GCACGUCGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 66415 0.73 0.382533
Target:  5'- gCGUGGUCGUGCccgugaAGUuCAUCGGCGAg -3'
miRNA:   3'- gGCACCAGCACG------UCGcGUGGUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 80482 0.73 0.382533
Target:  5'- aCGccGGaCGUcGCGGCGCACCAGUGGUc -3'
miRNA:   3'- gGCa-CCaGCA-CGUCGCGUGGUCGCUA- -5'
25140 5' -58.7 NC_005336.1 + 69309 0.73 0.390793
Target:  5'- uCCGUGGUCcuaaaugGCGGCGC-CCAuauGCGAUa -3'
miRNA:   3'- -GGCACCAGca-----CGUCGCGuGGU---CGCUA- -5'
25140 5' -58.7 NC_005336.1 + 96084 0.72 0.407658
Target:  5'- uCCGUGGUCacaaGCAGCG-GCCAGCGc- -3'
miRNA:   3'- -GGCACCAGca--CGUCGCgUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 130347 0.72 0.41626
Target:  5'- aCGUGGUgGcGC-GCGCGCCgAGCGAg -3'
miRNA:   3'- gGCACCAgCaCGuCGCGUGG-UCGCUa -5'
25140 5' -58.7 NC_005336.1 + 32854 0.72 0.41626
Target:  5'- gCCGgaGGcuaUCaUGCAGCGCACCAGCGc- -3'
miRNA:   3'- -GGCa-CC---AGcACGUCGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 46253 0.72 0.424096
Target:  5'- gUCGUGGaucgCGUuggcgaucugcgcGCGGCGCugCGGCGAg -3'
miRNA:   3'- -GGCACCa---GCA-------------CGUCGCGugGUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 14913 0.72 0.424096
Target:  5'- aCCGUGaacacguGUCGcGCAGgGCGCCGGCGc- -3'
miRNA:   3'- -GGCAC-------CAGCaCGUCgCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 48105 0.71 0.460872
Target:  5'- gCGcGGUCGcggcugcgcaUGCGGUGCGCCGGCGc- -3'
miRNA:   3'- gGCaCCAGC----------ACGUCGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 53571 0.71 0.460872
Target:  5'- gCgGUGGUCGcggccaUGCAGCGCGugGGCGGg -3'
miRNA:   3'- -GgCACCAGC------ACGUCGCGUggUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 110011 0.71 0.496408
Target:  5'- gUCGaGGUCGUGCAGCGagacgugcugcCCGGCGGc -3'
miRNA:   3'- -GGCaCCAGCACGUCGCgu---------GGUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 40279 0.71 0.507887
Target:  5'- gUGUGGcgCGccgGCGGCGCGCCGcGCGGc -3'
miRNA:   3'- gGCACCa-GCa--CGUCGCGUGGU-CGCUa -5'
25140 5' -58.7 NC_005336.1 + 51848 0.71 0.507887
Target:  5'- -gGUGGUCuggGUGGCGCGCgCGGCGGa -3'
miRNA:   3'- ggCACCAGca-CGUCGCGUG-GUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 68601 0.71 0.507887
Target:  5'- gCCGaGGagaagugCGUGCggaAGCGCACCAGCGc- -3'
miRNA:   3'- -GGCaCCa------GCACG---UCGCGUGGUCGCua -5'
25140 5' -58.7 NC_005336.1 + 112380 0.7 0.514634
Target:  5'- uCCGUGGUCagcaucgacgagaucGUGGCGCGCuCGGCGAa -3'
miRNA:   3'- -GGCACCAGca-------------CGUCGCGUG-GUCGCUa -5'
25140 5' -58.7 NC_005336.1 + 95650 0.7 0.517538
Target:  5'- cCCGUGGcCGccgGCAGCGCGUCGGCc-- -3'
miRNA:   3'- -GGCACCaGCa--CGUCGCGUGGUCGcua -5'
25140 5' -58.7 NC_005336.1 + 16104 0.7 0.527261
Target:  5'- gCGUGGUgGUGCAGCG-GCguGCGu- -3'
miRNA:   3'- gGCACCAgCACGUCGCgUGguCGCua -5'
25140 5' -58.7 NC_005336.1 + 14998 0.7 0.546905
Target:  5'- gCCGggccucgGGcUCGcGCGGCGCGCgGGCGGc -3'
miRNA:   3'- -GGCa------CC-AGCaCGUCGCGUGgUCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.