miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25141 3' -57.9 NC_005336.1 + 92000 0.66 0.811316
Target:  5'- aGCUUgaGGUuggCGGGCUUgaGCUCcGCg -3'
miRNA:   3'- aCGAGgaCCA---GCUCGAGgaCGAGaCG- -5'
25141 3' -57.9 NC_005336.1 + 14082 0.66 0.802463
Target:  5'- aGCaCCUGGUCuccgcugacgaaGAGCgccgCCgGCUCgGCg -3'
miRNA:   3'- aCGaGGACCAG------------CUCGa---GGaCGAGaCG- -5'
25141 3' -57.9 NC_005336.1 + 57846 0.66 0.802463
Target:  5'- cUGCgaCCUGcucgCGAGC--CUGCUCUGCu -3'
miRNA:   3'- -ACGa-GGACca--GCUCGagGACGAGACG- -5'
25141 3' -57.9 NC_005336.1 + 98275 0.66 0.793454
Target:  5'- aGCUUCUGGUgcaaGAGCcgCCgcaacagGC-CUGCg -3'
miRNA:   3'- aCGAGGACCAg---CUCGa-GGa------CGaGACG- -5'
25141 3' -57.9 NC_005336.1 + 130372 0.67 0.765587
Target:  5'- gGUUCUcGG-CGAGC-CCgagcgcGCUCUGCa -3'
miRNA:   3'- aCGAGGaCCaGCUCGaGGa-----CGAGACG- -5'
25141 3' -57.9 NC_005336.1 + 132950 0.67 0.765587
Target:  5'- aGCUCgaGGUCGcGCggCUGCUgCUGg -3'
miRNA:   3'- aCGAGgaCCAGCuCGagGACGA-GACg -5'
25141 3' -57.9 NC_005336.1 + 44925 0.67 0.756048
Target:  5'- cGCgcgCgUGGUCcugcucucaGAGCUgCUGCggagCUGCg -3'
miRNA:   3'- aCGa--GgACCAG---------CUCGAgGACGa---GACG- -5'
25141 3' -57.9 NC_005336.1 + 120657 0.67 0.746399
Target:  5'- cGCacaCUGGaCGGGCugcggcacUCCgUGCUCUGCu -3'
miRNA:   3'- aCGag-GACCaGCUCG--------AGG-ACGAGACG- -5'
25141 3' -57.9 NC_005336.1 + 98180 0.67 0.736649
Target:  5'- cGgUCCUGGggcUCGcGCaCCUGCUCgaGCa -3'
miRNA:   3'- aCgAGGACC---AGCuCGaGGACGAGa-CG- -5'
25141 3' -57.9 NC_005336.1 + 24502 0.67 0.727796
Target:  5'- aUGC-CCUGG-CaGGGCgcgaccacgguuuugUCUGCUCUGCu -3'
miRNA:   3'- -ACGaGGACCaG-CUCGa--------------GGACGAGACG- -5'
25141 3' -57.9 NC_005336.1 + 103775 0.68 0.686716
Target:  5'- aGUUCCgcgacgGGUaCGGGcCUCCUcGCUCguggGCa -3'
miRNA:   3'- aCGAGGa-----CCA-GCUC-GAGGA-CGAGa---CG- -5'
25141 3' -57.9 NC_005336.1 + 121839 0.68 0.666361
Target:  5'- cUGCgagaCCgcGGUCGGGC-CCUGCUCg-- -3'
miRNA:   3'- -ACGa---GGa-CCAGCUCGaGGACGAGacg -5'
25141 3' -57.9 NC_005336.1 + 51100 0.68 0.655113
Target:  5'- cGcCUCCUacagggaGGUCG-GCUCCUcGCUC-GCg -3'
miRNA:   3'- aC-GAGGA-------CCAGCuCGAGGA-CGAGaCG- -5'
25141 3' -57.9 NC_005336.1 + 103546 0.69 0.645894
Target:  5'- cUGCUCgUGGUCGAGaacggCgUGCUCg-- -3'
miRNA:   3'- -ACGAGgACCAGCUCga---GgACGAGacg -5'
25141 3' -57.9 NC_005336.1 + 130607 0.69 0.625383
Target:  5'- cGCUCgcgaCUGGUgGAGCgcgCgCUGCgcgcgCUGCg -3'
miRNA:   3'- aCGAG----GACCAgCUCGa--G-GACGa----GACG- -5'
25141 3' -57.9 NC_005336.1 + 17779 0.69 0.625383
Target:  5'- aGUUCCUGcUCGAcgaaguccacggGCUCCacgaagcGCUCUGCg -3'
miRNA:   3'- aCGAGGACcAGCU------------CGAGGa------CGAGACG- -5'
25141 3' -57.9 NC_005336.1 + 38928 0.69 0.625383
Target:  5'- cGCgcgCCUGGagGAGUUCCUGgaCcgGCc -3'
miRNA:   3'- aCGa--GGACCagCUCGAGGACgaGa-CG- -5'
25141 3' -57.9 NC_005336.1 + 54916 0.69 0.615132
Target:  5'- aGCUCgUuGUCGAGCgCCgGgUCUGCg -3'
miRNA:   3'- aCGAGgAcCAGCUCGaGGaCgAGACG- -5'
25141 3' -57.9 NC_005336.1 + 52408 0.69 0.615132
Target:  5'- aGCUgCUGGUcugCGAGCUCgUGUUucucaaccggCUGCa -3'
miRNA:   3'- aCGAgGACCA---GCUCGAGgACGA----------GACG- -5'
25141 3' -57.9 NC_005336.1 + 111200 0.69 0.604894
Target:  5'- gGCUgCgUGGcCGAGUaCCUGCUCgcgGCc -3'
miRNA:   3'- aCGA-GgACCaGCUCGaGGACGAGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.