miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25150 5' -55.4 NC_005336.1 + 96301 0.66 0.919
Target:  5'- gCGGGCGCGG-CG-GAGCgAGuGCGCa-- -3'
miRNA:   3'- -GCUCGCGCCuGUaCUCG-UC-UGCGaac -5'
25150 5' -55.4 NC_005336.1 + 72717 0.66 0.919
Target:  5'- cCGGGCGCGGugAgcucGcGCAGguuGCGCa-- -3'
miRNA:   3'- -GCUCGCGCCugUa---CuCGUC---UGCGaac -5'
25150 5' -55.4 NC_005336.1 + 45114 0.66 0.919
Target:  5'- -uAGCGUGGGCGUGAuaacgaaaacCAGGCGCa-- -3'
miRNA:   3'- gcUCGCGCCUGUACUc---------GUCUGCGaac -5'
25150 5' -55.4 NC_005336.1 + 74743 0.66 0.919
Target:  5'- uCGAGCGCGGAgGUGgcgaAGCAGuucCGg--- -3'
miRNA:   3'- -GCUCGCGCCUgUAC----UCGUCu--GCgaac -5'
25150 5' -55.4 NC_005336.1 + 9024 0.66 0.919
Target:  5'- -aGGCGCGGACcaccgccGAGCAG-CGCc-- -3'
miRNA:   3'- gcUCGCGCCUGua-----CUCGUCuGCGaac -5'
25150 5' -55.4 NC_005336.1 + 60851 0.66 0.919
Target:  5'- gGGGCucucgGCGGGCGUcucuGCGGGCGCg-- -3'
miRNA:   3'- gCUCG-----CGCCUGUAcu--CGUCUGCGaac -5'
25150 5' -55.4 NC_005336.1 + 41933 0.66 0.917269
Target:  5'- gGAGCGCGG-CGUGcAGCccGACcauguguucgcgcaGCUUGg -3'
miRNA:   3'- gCUCGCGCCuGUAC-UCGu-CUG--------------CGAAC- -5'
25150 5' -55.4 NC_005336.1 + 130332 0.66 0.913145
Target:  5'- aCGGGCGCGaGCccgGUGcccGCGGACGCg-- -3'
miRNA:   3'- -GCUCGCGCcUG---UACu--CGUCUGCGaac -5'
25150 5' -55.4 NC_005336.1 + 66446 0.66 0.913145
Target:  5'- aCGAGCGCGG-CGUccucGGCGGgcACGCg-- -3'
miRNA:   3'- -GCUCGCGCCuGUAc---UCGUC--UGCGaac -5'
25150 5' -55.4 NC_005336.1 + 10181 0.66 0.913145
Target:  5'- -cGGUGUcgGGGCGcGAGUAGGCGCUg- -3'
miRNA:   3'- gcUCGCG--CCUGUaCUCGUCUGCGAac -5'
25150 5' -55.4 NC_005336.1 + 88453 0.66 0.913145
Target:  5'- aGGGCaCGGGCAcguucgUGAGCuGGAUGCUc- -3'
miRNA:   3'- gCUCGcGCCUGU------ACUCG-UCUGCGAac -5'
25150 5' -55.4 NC_005336.1 + 38359 0.66 0.907048
Target:  5'- gCGcAGCGUGGGCGUGcucGGCAacgcGGCGCc-- -3'
miRNA:   3'- -GC-UCGCGCCUGUAC---UCGU----CUGCGaac -5'
25150 5' -55.4 NC_005336.1 + 44505 0.66 0.907048
Target:  5'- uGGGCGCGGGCuau-GCAGACcCg-- -3'
miRNA:   3'- gCUCGCGCCUGuacuCGUCUGcGaac -5'
25150 5' -55.4 NC_005336.1 + 9635 0.66 0.907048
Target:  5'- gCGAGCGCGGcCugGUGcGCGaGCGCUg- -3'
miRNA:   3'- -GCUCGCGCCuG--UACuCGUcUGCGAac -5'
25150 5' -55.4 NC_005336.1 + 69139 0.66 0.907048
Target:  5'- gCGcGCGCcuGGACGUGccGguGACGCUg- -3'
miRNA:   3'- -GCuCGCG--CCUGUACu-CguCUGCGAac -5'
25150 5' -55.4 NC_005336.1 + 64015 0.66 0.906425
Target:  5'- aCGAGCGCGaGAgcggcacCGUGGGCAugcucACGCUg- -3'
miRNA:   3'- -GCUCGCGC-CU-------GUACUCGUc----UGCGAac -5'
25150 5' -55.4 NC_005336.1 + 68003 0.66 0.903273
Target:  5'- cCGGGCGCcgcgcuuguguugcuGGACGcacucgGGGCGGugGCa-- -3'
miRNA:   3'- -GCUCGCG---------------CCUGUa-----CUCGUCugCGaac -5'
25150 5' -55.4 NC_005336.1 + 106987 0.66 0.900709
Target:  5'- uCGAGCGCgaGGACcUGAcGCuggcGGCGCUcaUGg -3'
miRNA:   3'- -GCUCGCG--CCUGuACU-CGu---CUGCGA--AC- -5'
25150 5' -55.4 NC_005336.1 + 53794 0.66 0.900709
Target:  5'- gCGAG-GCGGACGU--GCuGGCGCUg- -3'
miRNA:   3'- -GCUCgCGCCUGUAcuCGuCUGCGAac -5'
25150 5' -55.4 NC_005336.1 + 104950 0.66 0.900709
Target:  5'- gGAGCGCGacuGCAUGAucucGCAcGGCGCg-- -3'
miRNA:   3'- gCUCGCGCc--UGUACU----CGU-CUGCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.