miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25163 3' -54.4 NC_005336.1 + 48730 0.66 0.940319
Target:  5'- --cUCGGacgcGCUCGCGgCCGGCAA-GGAg -3'
miRNA:   3'- uuuAGCC----UGGGCGCgGGCUGUUaUCU- -5'
25163 3' -54.4 NC_005336.1 + 38121 0.66 0.940319
Target:  5'- ---gCGGGCgCGCGCUgGGCGAgcGGAa -3'
miRNA:   3'- uuuaGCCUGgGCGCGGgCUGUUa-UCU- -5'
25163 3' -54.4 NC_005336.1 + 103880 0.66 0.93984
Target:  5'- gAGcgCGGACCUGCGCaacaaggUCGACAAcGGc -3'
miRNA:   3'- -UUuaGCCUGGGCGCG-------GGCUGUUaUCu -5'
25163 3' -54.4 NC_005336.1 + 116602 0.66 0.935417
Target:  5'- --cUCGGGCa-GCGCCgCGaaGCGGUGGAa -3'
miRNA:   3'- uuuAGCCUGggCGCGG-GC--UGUUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 99871 0.66 0.935417
Target:  5'- --cUgGGGCUCGCGCCCugcGCGAgccUGGAg -3'
miRNA:   3'- uuuAgCCUGGGCGCGGGc--UGUU---AUCU- -5'
25163 3' -54.4 NC_005336.1 + 69401 0.66 0.935417
Target:  5'- ----aGGACCCGCGCuUCGugGAg--- -3'
miRNA:   3'- uuuagCCUGGGCGCG-GGCugUUaucu -5'
25163 3' -54.4 NC_005336.1 + 67605 0.66 0.935417
Target:  5'- ---gCGGuCUCGCGCgCGuCGAUAGGg -3'
miRNA:   3'- uuuaGCCuGGGCGCGgGCuGUUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 133481 0.66 0.930267
Target:  5'- ---gUGGACCUGaaGCCCGACAAc--- -3'
miRNA:   3'- uuuaGCCUGGGCg-CGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 76856 0.66 0.930267
Target:  5'- -uGUCGGGCgCGgGUCCGAUu-UAGGg -3'
miRNA:   3'- uuUAGCCUGgGCgCGGGCUGuuAUCU- -5'
25163 3' -54.4 NC_005336.1 + 84006 0.66 0.930267
Target:  5'- uGAAUCGGAagacgUCgGCGCCCGAgAAg--- -3'
miRNA:   3'- -UUUAGCCU-----GGgCGCGGGCUgUUaucu -5'
25163 3' -54.4 NC_005336.1 + 134213 0.66 0.924868
Target:  5'- ---cCGGACCC-CGCCUGuGCGGgcgAGAg -3'
miRNA:   3'- uuuaGCCUGGGcGCGGGC-UGUUa--UCU- -5'
25163 3' -54.4 NC_005336.1 + 104299 0.66 0.924868
Target:  5'- ---gCGGACaCC-CGCCCGACGGa--- -3'
miRNA:   3'- uuuaGCCUG-GGcGCGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 99984 0.66 0.924868
Target:  5'- -cAUgGGAuaCCCGCGCCagaacGCGGUGGAg -3'
miRNA:   3'- uuUAgCCU--GGGCGCGGgc---UGUUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 42220 0.66 0.924868
Target:  5'- ---gCGGuACCCGCGCaCCGcggccGCcGUGGAg -3'
miRNA:   3'- uuuaGCC-UGGGCGCG-GGC-----UGuUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 93979 0.66 0.924868
Target:  5'- ---cCGGACgCGUGCaCCGACucggucgccgaGAUGGAg -3'
miRNA:   3'- uuuaGCCUGgGCGCG-GGCUG-----------UUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 130910 0.66 0.924868
Target:  5'- gAGcgCGcGGCCCGCuGCCUGGCGggGGu -3'
miRNA:   3'- -UUuaGC-CUGGGCG-CGGGCUGUuaUCu -5'
25163 3' -54.4 NC_005336.1 + 109115 0.66 0.919219
Target:  5'- ---aCGGGCUCGCGUgCCGACAc---- -3'
miRNA:   3'- uuuaGCCUGGGCGCG-GGCUGUuaucu -5'
25163 3' -54.4 NC_005336.1 + 65738 0.67 0.913322
Target:  5'- gAAcgCGGACUCGCGUCCGGa------ -3'
miRNA:   3'- -UUuaGCCUGGGCGCGGGCUguuaucu -5'
25163 3' -54.4 NC_005336.1 + 10020 0.67 0.913322
Target:  5'- ----gGGGCCgGCGUUCGucGCGAUGGAg -3'
miRNA:   3'- uuuagCCUGGgCGCGGGC--UGUUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 52485 0.67 0.907178
Target:  5'- ---gUGGGCuCCGCGCCCgGACGGc--- -3'
miRNA:   3'- uuuaGCCUG-GGCGCGGG-CUGUUaucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.