miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25163 3' -54.4 NC_005336.1 + 52485 0.67 0.907178
Target:  5'- ---gUGGGCuCCGCGCCCgGACGGc--- -3'
miRNA:   3'- uuuaGCCUG-GGCGCGGG-CUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 68411 0.67 0.907178
Target:  5'- gAAGUCGGGgaCCGCGUCgGGC-GUGGGc -3'
miRNA:   3'- -UUUAGCCUg-GGCGCGGgCUGuUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 64714 0.67 0.900789
Target:  5'- ---gCGGGCCCGCGCgCgCGGCGc---- -3'
miRNA:   3'- uuuaGCCUGGGCGCG-G-GCUGUuaucu -5'
25163 3' -54.4 NC_005336.1 + 3995 0.67 0.894157
Target:  5'- ---cCGGGCCCGcCGCCCGcGCGc---- -3'
miRNA:   3'- uuuaGCCUGGGC-GCGGGC-UGUuaucu -5'
25163 3' -54.4 NC_005336.1 + 29014 0.67 0.894157
Target:  5'- --cUCGcACCCGCaGCCCGGCGGcAGc -3'
miRNA:   3'- uuuAGCcUGGGCG-CGGGCUGUUaUCu -5'
25163 3' -54.4 NC_005336.1 + 113444 0.67 0.887287
Target:  5'- ---gCGGACUccgcggcgcgCGCGCCCGGCGAc--- -3'
miRNA:   3'- uuuaGCCUGG----------GCGCGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 132238 0.67 0.887287
Target:  5'- cAGGUgGGACCuugcuCGCuGCCCGGCGaacugGUGGAg -3'
miRNA:   3'- -UUUAgCCUGG-----GCG-CGGGCUGU-----UAUCU- -5'
25163 3' -54.4 NC_005336.1 + 75964 0.67 0.88518
Target:  5'- ---cCGGACuuGCGCUccauggcggccgcgCGGCGGUAGGc -3'
miRNA:   3'- uuuaGCCUGggCGCGG--------------GCUGUUAUCU- -5'
25163 3' -54.4 NC_005336.1 + 16297 0.68 0.880182
Target:  5'- ---aCGGGCCgCGCGUCCGAgAcUAGc -3'
miRNA:   3'- uuuaGCCUGG-GCGCGGGCUgUuAUCu -5'
25163 3' -54.4 NC_005336.1 + 14540 0.68 0.872847
Target:  5'- --cUCGaGCuCCGCGCCCGGCAc---- -3'
miRNA:   3'- uuuAGCcUG-GGCGCGGGCUGUuaucu -5'
25163 3' -54.4 NC_005336.1 + 39532 0.68 0.872847
Target:  5'- --uUCGGGCUaaCGCuGCCCGACGAc--- -3'
miRNA:   3'- uuuAGCCUGG--GCG-CGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 107670 0.68 0.872847
Target:  5'- ---cUGGACgCCGUGCUCGACGAg--- -3'
miRNA:   3'- uuuaGCCUG-GGCGCGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 67440 0.68 0.872101
Target:  5'- --cUCGGGCauauCCGUGUCCGGCAucucguaGUAGGa -3'
miRNA:   3'- uuuAGCCUG----GGCGCGGGCUGU-------UAUCU- -5'
25163 3' -54.4 NC_005336.1 + 98317 0.68 0.865287
Target:  5'- aAGcgCGGACCCGCacGCCgCG-CAcgAGAg -3'
miRNA:   3'- -UUuaGCCUGGGCG--CGG-GCuGUuaUCU- -5'
25163 3' -54.4 NC_005336.1 + 48059 0.68 0.865287
Target:  5'- gAGAUCGGcuUUCGCGCCCGGCuggucgacgGGAc -3'
miRNA:   3'- -UUUAGCCu-GGGCGCGGGCUGuua------UCU- -5'
25163 3' -54.4 NC_005336.1 + 87235 0.68 0.857508
Target:  5'- gGGGUCGuGCuuGCGCCCGuCGAUGa- -3'
miRNA:   3'- -UUUAGCcUGggCGCGGGCuGUUAUcu -5'
25163 3' -54.4 NC_005336.1 + 68088 0.68 0.849518
Target:  5'- ---aCGGACUCGUcguGCCCGGCGAa--- -3'
miRNA:   3'- uuuaGCCUGGGCG---CGGGCUGUUaucu -5'
25163 3' -54.4 NC_005336.1 + 109860 0.68 0.849518
Target:  5'- -uGUCGGagaccuccacGCCCGCGCCgaaGGCGAUGa- -3'
miRNA:   3'- uuUAGCC----------UGGGCGCGGg--CUGUUAUcu -5'
25163 3' -54.4 NC_005336.1 + 100536 0.68 0.849518
Target:  5'- ---cUGGACgCCGUGCCCGcGCGGaAGAa -3'
miRNA:   3'- uuuaGCCUG-GGCGCGGGC-UGUUaUCU- -5'
25163 3' -54.4 NC_005336.1 + 54413 0.68 0.849518
Target:  5'- ----aGGACCCGCGCCUgGGCGccucGGAc -3'
miRNA:   3'- uuuagCCUGGGCGCGGG-CUGUua--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.