miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25163 5' -57.9 NC_005336.1 + 50486 0.81 0.143421
Target:  5'- gGCUCCGUAGAgcccguGGGGGCGCCGcGCCCGc -3'
miRNA:   3'- -UGGGGCAUUU------UCCUCGCGGC-UGGGCa -5'
25163 5' -57.9 NC_005336.1 + 76163 0.66 0.826518
Target:  5'- cGCCgCCGUugAAGAGcGGCGUCuGCCCGa -3'
miRNA:   3'- -UGG-GGCA--UUUUCcUCGCGGcUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 46711 0.66 0.826518
Target:  5'- cACCCCGacucgguggUGAGccuGGAGC-CCGACCuCGa -3'
miRNA:   3'- -UGGGGC---------AUUUu--CCUCGcGGCUGG-GCa -5'
25163 5' -57.9 NC_005336.1 + 49557 0.66 0.818054
Target:  5'- gGCCCCG-AGAcuGAGCGCCGcugcACgCGg -3'
miRNA:   3'- -UGGGGCaUUUucCUCGCGGC----UGgGCa -5'
25163 5' -57.9 NC_005336.1 + 138782 0.66 0.818054
Target:  5'- gACCgCGggGAGcGGAGCgGCCGACCg-- -3'
miRNA:   3'- -UGGgGCauUUU-CCUCG-CGGCUGGgca -5'
25163 5' -57.9 NC_005336.1 + 14973 0.67 0.7917
Target:  5'- -aCCCGUGcagcGGcGAGCGCCGAgCgCCGg -3'
miRNA:   3'- ugGGGCAUuu--UC-CUCGCGGCU-G-GGCa -5'
25163 5' -57.9 NC_005336.1 + 61924 0.67 0.772483
Target:  5'- aGCgCCGggAAGAGGucgcagaGGUGCCGGCUCGa -3'
miRNA:   3'- -UGgGGCa-UUUUCC-------UCGCGGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 54160 0.68 0.735417
Target:  5'- uCCUCGUc--GGGcGCGuCCGGCCCGg -3'
miRNA:   3'- uGGGGCAuuuUCCuCGC-GGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 124690 0.68 0.725675
Target:  5'- gGCCCgCGgcGucGGcgGGCGCCGACCg-- -3'
miRNA:   3'- -UGGG-GCauUuuCC--UCGCGGCUGGgca -5'
25163 5' -57.9 NC_005336.1 + 68090 0.68 0.725675
Target:  5'- gGCCUCG-AGAAGcGGGcCGgCGGCCCGa -3'
miRNA:   3'- -UGGGGCaUUUUC-CUC-GCgGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 119595 0.68 0.705964
Target:  5'- aGCCacgugcaCGUGGAcGaGAGCGUgGACCCGUu -3'
miRNA:   3'- -UGGg------GCAUUUuC-CUCGCGgCUGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 27927 0.74 0.389092
Target:  5'- gACCCCGc-GAAGGuGCGCCG-CUCGUc -3'
miRNA:   3'- -UGGGGCauUUUCCuCGCGGCuGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 120742 0.72 0.468258
Target:  5'- uACCUCGacgAGGAGGaAGCGCCGGgCUGUa -3'
miRNA:   3'- -UGGGGCa--UUUUCC-UCGCGGCUgGGCA- -5'
25163 5' -57.9 NC_005336.1 + 1031 0.7 0.584912
Target:  5'- uCCCCGcGGucGcGGGCGgCGGCCCGUc -3'
miRNA:   3'- uGGGGCaUUuuC-CUCGCgGCUGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 92542 0.7 0.59499
Target:  5'- uGCCgCCGgacgAAGAGGAGC-CgGACUCGUg -3'
miRNA:   3'- -UGG-GGCa---UUUUCCUCGcGgCUGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 50182 0.69 0.625356
Target:  5'- cACgCCCG-AAGAGGGGUGCgCGGCCgGc -3'
miRNA:   3'- -UG-GGGCaUUUUCCUCGCG-GCUGGgCa -5'
25163 5' -57.9 NC_005336.1 + 5887 0.69 0.645637
Target:  5'- gACCuuGccGAAG-AGCGCCGuCCCGUa -3'
miRNA:   3'- -UGGggCauUUUCcUCGCGGCuGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 95039 0.69 0.67596
Target:  5'- uCCUCGUAGGAcauGGucGGCGUgGACCCGg -3'
miRNA:   3'- uGGGGCAUUUU---CC--UCGCGgCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 62982 1.06 0.002761
Target:  5'- gACCCCGUAAAAGGAGCGCCGACCCGUc -3'
miRNA:   3'- -UGGGGCAUUUUCCUCGCGGCUGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 138782 0.66 0.818054
Target:  5'- gACCgCGggGAGcGGAGCgGCCGACCg-- -3'
miRNA:   3'- -UGGgGCauUUU-CCUCG-CGGCUGGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.