miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25171 3' -55.9 NC_005336.1 + 9635 0.66 0.903882
Target:  5'- gCGAGcGcGGCCUGGuGcgCGAGC-GCUGCg -3'
miRNA:   3'- -GCUC-C-UCGGGUU-CuaGCUCGaCGACG- -5'
25171 3' -55.9 NC_005336.1 + 45774 0.66 0.903882
Target:  5'- gGAGGAGCgCAccGGcauGUCGAGCagGCgcucgGCc -3'
miRNA:   3'- gCUCCUCGgGU--UC---UAGCUCGa-CGa----CG- -5'
25171 3' -55.9 NC_005336.1 + 82682 0.66 0.903882
Target:  5'- uGuGGaAGCUCGAGAgCGc-CUGCUGCg -3'
miRNA:   3'- gCuCC-UCGGGUUCUaGCucGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 44217 0.66 0.897437
Target:  5'- gCGAGaccccgcGCCCGAGGagguaGAGCgGCUGCu -3'
miRNA:   3'- -GCUCcu-----CGGGUUCUag---CUCGaCGACG- -5'
25171 3' -55.9 NC_005336.1 + 103637 0.66 0.897437
Target:  5'- gCGAGGAcGCCgu-GGUCGAGgUGCa-- -3'
miRNA:   3'- -GCUCCU-CGGguuCUAGCUCgACGacg -5'
25171 3' -55.9 NC_005336.1 + 126749 0.66 0.89678
Target:  5'- --uGGGGCCgucguggCAGGcGUCGGuauGCUGCUGCu -3'
miRNA:   3'- gcuCCUCGG-------GUUC-UAGCU---CGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 97136 0.66 0.89678
Target:  5'- aCGAGGugcucgcGGCCCGcGA-CcAGCUGCUGg -3'
miRNA:   3'- -GCUCC-------UCGGGUuCUaGcUCGACGACg -5'
25171 3' -55.9 NC_005336.1 + 110504 0.66 0.893457
Target:  5'- gGAGGAgugGCgcaaagggcggcacgCCAAGAccgcgacgcUCGAaaaGCUGCUGCa -3'
miRNA:   3'- gCUCCU---CG---------------GGUUCU---------AGCU---CGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 49551 0.66 0.890757
Target:  5'- aGcGGcGGcCCCGAGAcUGAGCgccGCUGCa -3'
miRNA:   3'- gCuCC-UC-GGGUUCUaGCUCGa--CGACG- -5'
25171 3' -55.9 NC_005336.1 + 66770 0.66 0.890757
Target:  5'- aCGGcGcGGCCCAGGAUCuGGUUGaaCUGCg -3'
miRNA:   3'- -GCU-CcUCGGGUUCUAGcUCGAC--GACG- -5'
25171 3' -55.9 NC_005336.1 + 24671 0.66 0.890757
Target:  5'- --cGGuGCCCAuGA-CGGGCUcCUGCa -3'
miRNA:   3'- gcuCCuCGGGUuCUaGCUCGAcGACG- -5'
25171 3' -55.9 NC_005336.1 + 124804 0.66 0.890757
Target:  5'- cCGcGcGAGCCCGAGGcccggcgcUCGGcGCUcgccGCUGCa -3'
miRNA:   3'- -GCuC-CUCGGGUUCU--------AGCU-CGA----CGACG- -5'
25171 3' -55.9 NC_005336.1 + 23632 0.66 0.886637
Target:  5'- --uGGAgaagcuaucgcucgcGCCCGAGAaCGugguGCUGCUGUa -3'
miRNA:   3'- gcuCCU---------------CGGGUUCUaGCu---CGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 12741 0.66 0.886637
Target:  5'- gGAGGAGUUCAAcgacggcaagcagguGGUCGcGCUcCUGCg -3'
miRNA:   3'- gCUCCUCGGGUU---------------CUAGCuCGAcGACG- -5'
25171 3' -55.9 NC_005336.1 + 21984 0.66 0.883845
Target:  5'- uCGAGGAcgacCCCGAcAUCaaGGGCcUGCUGCu -3'
miRNA:   3'- -GCUCCUc---GGGUUcUAG--CUCG-ACGACG- -5'
25171 3' -55.9 NC_005336.1 + 41665 0.66 0.883845
Target:  5'- gGAGGAGUCCGGGAacaCGAacaGCgUGC-GCg -3'
miRNA:   3'- gCUCCUCGGGUUCUa--GCU---CG-ACGaCG- -5'
25171 3' -55.9 NC_005336.1 + 8062 0.66 0.883845
Target:  5'- gGAGGAGCUUGAGGcagccccgCGuGUUGUUGUa -3'
miRNA:   3'- gCUCCUCGGGUUCUa-------GCuCGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 64182 0.66 0.883141
Target:  5'- -uGGGA-CCCAGGcgCGccagacaGGCUGCUGUu -3'
miRNA:   3'- gcUCCUcGGGUUCuaGC-------UCGACGACG- -5'
25171 3' -55.9 NC_005336.1 + 124785 0.66 0.876705
Target:  5'- uCGAGGGGCUCAuGAcCGAGauccacCUGCg -3'
miRNA:   3'- -GCUCCUCGGGUuCUaGCUCgac---GACG- -5'
25171 3' -55.9 NC_005336.1 + 11803 0.66 0.876705
Target:  5'- gGuGGAGCUC-AGGUUGcAGCagaaGCUGCa -3'
miRNA:   3'- gCuCCUCGGGuUCUAGC-UCGa---CGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.