miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25171 5' -64.6 NC_005336.1 + 126775 0.66 0.558614
Target:  5'- aACGCGGccugUCCCGGCgCGUGUccguuccaagucaugGUGUGCGg -3'
miRNA:   3'- -UGCGCCu---GGGGCUG-GCGCA---------------CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 40279 0.66 0.554842
Target:  5'- gUGUGGcGCgCCGGCgGCGcGCcGCGCGg -3'
miRNA:   3'- uGCGCC-UGgGGCUGgCGCaCG-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 97354 0.66 0.554842
Target:  5'- gGCGCGG-CCUCG-CUGC-UGCGCuCGg -3'
miRNA:   3'- -UGCGCCuGGGGCuGGCGcACGCGcGC- -5'
25171 5' -64.6 NC_005336.1 + 47815 0.66 0.554842
Target:  5'- uGCGUGG-CCUgGAuCCGCGcgaUGCGCaGCa -3'
miRNA:   3'- -UGCGCCuGGGgCU-GGCGC---ACGCG-CGc -5'
25171 5' -64.6 NC_005336.1 + 21568 0.66 0.554842
Target:  5'- uCGCGGACggCGAgCC-CGUGCGCGaCGc -3'
miRNA:   3'- uGCGCCUGggGCU-GGcGCACGCGC-GC- -5'
25171 5' -64.6 NC_005336.1 + 111527 0.66 0.554842
Target:  5'- gUGCGaGugCCCGA-CGCaGUGCcGCGCc -3'
miRNA:   3'- uGCGC-CugGGGCUgGCG-CACG-CGCGc -5'
25171 5' -64.6 NC_005336.1 + 77492 0.66 0.554842
Target:  5'- cCGCGGAgCCCG-CCGU--GCGCGa- -3'
miRNA:   3'- uGCGCCUgGGGCuGGCGcaCGCGCgc -5'
25171 5' -64.6 NC_005336.1 + 102593 0.66 0.554842
Target:  5'- aGCGCGaaGACCgUGcCCGCGgGCGCGg- -3'
miRNA:   3'- -UGCGC--CUGGgGCuGGCGCaCGCGCgc -5'
25171 5' -64.6 NC_005336.1 + 49551 0.66 0.554842
Target:  5'- -aGCGGcgGCCCCGagacugagcGCCGC-UGCaCGCGg -3'
miRNA:   3'- ugCGCC--UGGGGC---------UGGCGcACGcGCGC- -5'
25171 5' -64.6 NC_005336.1 + 101426 0.66 0.554842
Target:  5'- -gGCGGACg-CGGCCGC--GCGCGUGg -3'
miRNA:   3'- ugCGCCUGggGCUGGCGcaCGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 115520 0.66 0.554842
Target:  5'- cCGCGaGGuCCUCGGCCaCGUgcacgaccucGCGCGCGu -3'
miRNA:   3'- uGCGC-CU-GGGGCUGGcGCA----------CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 46254 0.66 0.554842
Target:  5'- uCGUGGAUCgCGuUgGCGaucUGCGCGCGg -3'
miRNA:   3'- uGCGCCUGGgGCuGgCGC---ACGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 70585 0.66 0.554842
Target:  5'- gGCGUugauGACCUCGAaggcCCGCucGCGCGCGa -3'
miRNA:   3'- -UGCGc---CUGGGGCU----GGCGcaCGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 11661 0.66 0.554842
Target:  5'- -gGCGGcGCgCCCaGgCGCGUGCGcCGCa -3'
miRNA:   3'- ugCGCC-UG-GGGcUgGCGCACGC-GCGc -5'
25171 5' -64.6 NC_005336.1 + 93557 0.66 0.551078
Target:  5'- aACGC-GAUCCaCGACCugugcaucgcgaaCGUGCGCGUGa -3'
miRNA:   3'- -UGCGcCUGGG-GCUGGc------------GCACGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 123557 0.66 0.549199
Target:  5'- gGCGCGGACCCCGaggcgcucgacGaacacgggcucacgcCCGCG-GaCGUGCu -3'
miRNA:   3'- -UGCGCCUGGGGC-----------U---------------GGCGCaC-GCGCGc -5'
25171 5' -64.6 NC_005336.1 + 58433 0.66 0.545447
Target:  5'- aGCGUGGGCuucuuCUCGGCCuCGagGCGCGCc -3'
miRNA:   3'- -UGCGCCUG-----GGGCUGGcGCa-CGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 40601 0.66 0.545447
Target:  5'- cGCGCGGGCgCgCCGucguugugGCUGCG-GCgGCGCa -3'
miRNA:   3'- -UGCGCCUG-G-GGC--------UGGCGCaCG-CGCGc -5'
25171 5' -64.6 NC_005336.1 + 6101 0.66 0.545447
Target:  5'- gGCGCGcGCCCUcGCCGCGca-GCGCc -3'
miRNA:   3'- -UGCGCcUGGGGcUGGCGCacgCGCGc -5'
25171 5' -64.6 NC_005336.1 + 3407 0.66 0.545447
Target:  5'- cCGCGu-CCgCGACCGCcgccauGUGCcGCGCGu -3'
miRNA:   3'- uGCGCcuGGgGCUGGCG------CACG-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.