miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25171 5' -64.6 NC_005336.1 + 41153 0.66 0.517591
Target:  5'- cGCGCGGGaaaaUGACCuccgGCGUGCGCgGCa -3'
miRNA:   3'- -UGCGCCUggg-GCUGG----CGCACGCG-CGc -5'
25171 5' -64.6 NC_005336.1 + 122159 0.66 0.517591
Target:  5'- aGCGCGGAgggcgugaugaCCCGGcCCGCcagcaacUGCGCGCc -3'
miRNA:   3'- -UGCGCCUg----------GGGCU-GGCGc------ACGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 14895 0.66 0.507518
Target:  5'- cGCGCGcGCCuCCGGcgcaguuggcugcCCGCGcGCcGCGCGg -3'
miRNA:   3'- -UGCGCcUGG-GGCU-------------GGCGCaCG-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 43396 0.66 0.526817
Target:  5'- cACGCGcGACCgCG-CCGCGcGCcacCGCGa -3'
miRNA:   3'- -UGCGC-CUGGgGCuGGCGCaCGc--GCGC- -5'
25171 5' -64.6 NC_005336.1 + 101638 0.66 0.508431
Target:  5'- uCGCGGugcGCUCCaccgaggagGGCCGCGaGUGCGUGg -3'
miRNA:   3'- uGCGCC---UGGGG---------CUGGCGCaCGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 30809 0.66 0.508431
Target:  5'- -gGUaGugCgCGACCGCGcggGCGCGCa -3'
miRNA:   3'- ugCGcCugGgGCUGGCGCa--CGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 64596 0.66 0.516672
Target:  5'- -aGaCGGGCUCCGGCCGCuggacguggccGUGUgucuugugcagcuGCGCGg -3'
miRNA:   3'- ugC-GCCUGGGGCUGGCG-----------CACG-------------CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 104377 0.66 0.517591
Target:  5'- uGCGCGcGCUgaCCGugCGCGaGCGcCGCGc -3'
miRNA:   3'- -UGCGCcUGG--GGCugGCGCaCGC-GCGC- -5'
25171 5' -64.6 NC_005336.1 + 123656 0.66 0.526817
Target:  5'- gACGCGGGCgugagcauggCCaCGuCgCGCGacGCGCGCGg -3'
miRNA:   3'- -UGCGCCUG----------GG-GCuG-GCGCa-CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 33233 0.66 0.517591
Target:  5'- uUGuCGGGCaCCagGugCGCGagGCGCGCGu -3'
miRNA:   3'- uGC-GCCUG-GGg-CugGCGCa-CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 77388 0.66 0.508431
Target:  5'- cGCGCGGGCggCGgggaugugcaGCCGCGgagaaaaacGCGCGCGu -3'
miRNA:   3'- -UGCGCCUGggGC----------UGGCGCa--------CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 75945 0.66 0.508431
Target:  5'- cACGCGGAa---GACCGCG-GCGC-CGg -3'
miRNA:   3'- -UGCGCCUggggCUGGCGCaCGCGcGC- -5'
25171 5' -64.6 NC_005336.1 + 57231 0.66 0.517591
Target:  5'- -aGUGG-CgCUGACCGCGUcgaGCGCGg -3'
miRNA:   3'- ugCGCCuGgGGCUGGCGCAcg-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 44467 0.66 0.526817
Target:  5'- cUGCGGuagcaugguguUCCCGAUCGUGUGCucgacGUGCGg -3'
miRNA:   3'- uGCGCCu----------GGGGCUGGCGCACG-----CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 136137 0.66 0.508431
Target:  5'- -aGuCGaGACCCCucccucccGCCGCG-GCGCGCa -3'
miRNA:   3'- ugC-GC-CUGGGGc-------UGGCGCaCGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 103522 0.66 0.535173
Target:  5'- gGCGCGGGCCggcucauCCGcCCGC-UGCuCGUGg -3'
miRNA:   3'- -UGCGCCUGG-------GGCuGGCGcACGcGCGC- -5'
25171 5' -64.6 NC_005336.1 + 65965 0.66 0.517591
Target:  5'- cUGCGGGCgaUGACCGCGUcGCGgcCGUGg -3'
miRNA:   3'- uGCGCCUGggGCUGGCGCA-CGC--GCGC- -5'
25171 5' -64.6 NC_005336.1 + 66001 0.66 0.526817
Target:  5'- cCGUGGagGCgCUGcGCgGCGUGUGCGCGc -3'
miRNA:   3'- uGCGCC--UGgGGC-UGgCGCACGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 68047 0.66 0.526817
Target:  5'- -aGCGG-CCgCGcCCGCGggGCaGCGCGu -3'
miRNA:   3'- ugCGCCuGGgGCuGGCGCa-CG-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 36028 0.66 0.526817
Target:  5'- uACGC-GAUCCCgcaGugCGCGUccuGCGUGCGc -3'
miRNA:   3'- -UGCGcCUGGGG---CugGCGCA---CGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.