miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25171 5' -64.6 NC_005336.1 + 3407 0.66 0.545447
Target:  5'- cCGCGu-CCgCGACCGCcgccauGUGCcGCGCGu -3'
miRNA:   3'- uGCGCcuGGgGCUGGCG------CACG-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 3407 0.66 0.545447
Target:  5'- cCGCGu-CCgCGACCGCcgccauGUGCcGCGCGu -3'
miRNA:   3'- uGCGCcuGGgGCUGGCG------CACG-CGCGC- -5'
25171 5' -64.6 NC_005336.1 + 3477 0.66 0.536104
Target:  5'- cGCGCGGACggggCCCGccuCCGCGaagGCGgccggcaGCGg -3'
miRNA:   3'- -UGCGCCUG----GGGCu--GGCGCa--CGCg------CGC- -5'
25171 5' -64.6 NC_005336.1 + 3477 0.66 0.536104
Target:  5'- cGCGCGGACggggCCCGccuCCGCGaagGCGgccggcaGCGg -3'
miRNA:   3'- -UGCGCCUG----GGGCu--GGCGCa--CGCg------CGC- -5'
25171 5' -64.6 NC_005336.1 + 3709 0.68 0.41296
Target:  5'- uGCGCGGccgggagaggcGCCCgGGgCGCG-GCGgGCGc -3'
miRNA:   3'- -UGCGCC-----------UGGGgCUgGCGCaCGCgCGC- -5'
25171 5' -64.6 NC_005336.1 + 3709 0.68 0.41296
Target:  5'- uGCGCGGccgggagaggcGCCCgGGgCGCG-GCGgGCGc -3'
miRNA:   3'- -UGCGCC-----------UGGGgCUgGCGCaCGCgCGC- -5'
25171 5' -64.6 NC_005336.1 + 3784 0.76 0.130992
Target:  5'- cGCGCGG-CCCgCGGCCGCcaGCGcCGCGg -3'
miRNA:   3'- -UGCGCCuGGG-GCUGGCGcaCGC-GCGC- -5'
25171 5' -64.6 NC_005336.1 + 3784 0.76 0.130992
Target:  5'- cGCGCGG-CCCgCGGCCGCcaGCGcCGCGg -3'
miRNA:   3'- -UGCGCCuGGG-GCUGGCGcaCGC-GCGC- -5'
25171 5' -64.6 NC_005336.1 + 3888 0.69 0.373365
Target:  5'- cCGCGG-CCCCGcGCCGCGccaGCaGCaGCGg -3'
miRNA:   3'- uGCGCCuGGGGC-UGGCGCa--CG-CG-CGC- -5'
25171 5' -64.6 NC_005336.1 + 3888 0.69 0.373365
Target:  5'- cCGCGG-CCCCGcGCCGCGccaGCaGCaGCGg -3'
miRNA:   3'- uGCGCCuGGGGC-UGGCGCa--CG-CG-CGC- -5'
25171 5' -64.6 NC_005336.1 + 3932 0.67 0.481378
Target:  5'- -aGCGGGCCgCCG-CgGCGcagcgccGCGCGCa -3'
miRNA:   3'- ugCGCCUGG-GGCuGgCGCa------CGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 3974 0.67 0.498434
Target:  5'- -aGCGGcagccGCCCCGccgguccgggcccGCCGCccGCGCGCc -3'
miRNA:   3'- ugCGCC-----UGGGGC-------------UGGCGcaCGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 5445 0.66 0.545447
Target:  5'- aGCGCGGuCgCCaCG-CgCGCGaGCGCGCa -3'
miRNA:   3'- -UGCGCCuG-GG-GCuG-GCGCaCGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 5983 0.68 0.41296
Target:  5'- cGCGCgGGugCUCGAUgGgGUGCG-GCGa -3'
miRNA:   3'- -UGCG-CCugGGGCUGgCgCACGCgCGC- -5'
25171 5' -64.6 NC_005336.1 + 6054 0.67 0.472516
Target:  5'- cGCGCGGACCaCGGUCGCGUaguccGCcaGCGCu -3'
miRNA:   3'- -UGCGCCUGGgGCUGGCGCA-----CG--CGCGc -5'
25171 5' -64.6 NC_005336.1 + 6077 0.67 0.500245
Target:  5'- cGCGUGGAagCCCGGguccuCCGCGgcgaugugcggguacGCGCGCa -3'
miRNA:   3'- -UGCGCCUg-GGGCU-----GGCGCa--------------CGCGCGc -5'
25171 5' -64.6 NC_005336.1 + 6101 0.66 0.545447
Target:  5'- gGCGCGcGCCCUcGCCGCGca-GCGCc -3'
miRNA:   3'- -UGCGCcUGGGGcUGGCGCacgCGCGc -5'
25171 5' -64.6 NC_005336.1 + 6262 0.7 0.336427
Target:  5'- -aGCGGaaggucGCgCCGGCCGCGgucacgcugaGCGCGCGc -3'
miRNA:   3'- ugCGCC------UGgGGCUGGCGCa---------CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 7155 0.67 0.481378
Target:  5'- cCGCGGAagUUCaCGuCCGCGUcaguugccacgaGCGCGCGg -3'
miRNA:   3'- uGCGCCU--GGG-GCuGGCGCA------------CGCGCGC- -5'
25171 5' -64.6 NC_005336.1 + 7342 0.69 0.373365
Target:  5'- -aGCGGcuGCCgCGgcaGCCGCGgGCGUGCGa -3'
miRNA:   3'- ugCGCC--UGGgGC---UGGCGCaCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.