miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25172 3' -54.9 NC_005336.1 + 95248 0.66 0.932643
Target:  5'- ----gCGGCACGGcgggcagGUUCGCGGAcGCGu -3'
miRNA:   3'- augaaGUUGUGCCa------CAGGCGCCU-CGC- -5'
25172 3' -54.9 NC_005336.1 + 5437 0.66 0.932643
Target:  5'- gGCgcgUCAGCGCGGUcgccaCgCGCGcGAGCGc -3'
miRNA:   3'- aUGa--AGUUGUGCCAca---G-GCGC-CUCGC- -5'
25172 3' -54.9 NC_005336.1 + 80347 0.66 0.932643
Target:  5'- ----cCAGCACGuGccGUCCGCGGcGCGc -3'
miRNA:   3'- augaaGUUGUGC-Ca-CAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 39585 0.66 0.927392
Target:  5'- -cCUcCAGCACGGUGcgUGCGGGGUu -3'
miRNA:   3'- auGAaGUUGUGCCACagGCGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 87042 0.66 0.927392
Target:  5'- cGC-UCAcCAUGGUGUUC-UGGAGCGc -3'
miRNA:   3'- aUGaAGUuGUGCCACAGGcGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 126310 0.66 0.927392
Target:  5'- cGCUc---CGCGGUG-CCGUGGAGuCGg -3'
miRNA:   3'- aUGAaguuGUGCCACaGGCGCCUC-GC- -5'
25172 3' -54.9 NC_005336.1 + 67061 0.66 0.921895
Target:  5'- cACUUCGcCACGGUGaugcgcaacCUGCGcGAGCu -3'
miRNA:   3'- aUGAAGUuGUGCCACa--------GGCGC-CUCGc -5'
25172 3' -54.9 NC_005336.1 + 20952 0.66 0.921895
Target:  5'- gUGCgugUCAGCGCGGg--CUGUGGGcuGCGg -3'
miRNA:   3'- -AUGa--AGUUGUGCCacaGGCGCCU--CGC- -5'
25172 3' -54.9 NC_005336.1 + 15724 0.66 0.916152
Target:  5'- aGCgacgCGGCgACGGcGUCCGCGGGaggccGCGu -3'
miRNA:   3'- aUGaa--GUUG-UGCCaCAGGCGCCU-----CGC- -5'
25172 3' -54.9 NC_005336.1 + 113426 0.66 0.916152
Target:  5'- gGCUUCAccguggaccuCGCGGacUCCGCGGcGCGc -3'
miRNA:   3'- aUGAAGUu---------GUGCCacAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 139686 0.66 0.916152
Target:  5'- cGCggCuGCGgGGUGccgccUCCGCGGAGuCGg -3'
miRNA:   3'- aUGaaGuUGUgCCAC-----AGGCGCCUC-GC- -5'
25172 3' -54.9 NC_005336.1 + 139686 0.66 0.916152
Target:  5'- cGCggCuGCGgGGUGccgccUCCGCGGAGuCGg -3'
miRNA:   3'- aUGaaGuUGUgCCAC-----AGGCGCCUC-GC- -5'
25172 3' -54.9 NC_005336.1 + 13487 0.66 0.916152
Target:  5'- aGCgcCGACuccACGGca-CCGCGGAGCGa -3'
miRNA:   3'- aUGaaGUUG---UGCCacaGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 42012 0.66 0.914382
Target:  5'- gGCcgCGAcCACGGUGUCCacgaugagcuuguuGCGGuGCa -3'
miRNA:   3'- aUGaaGUU-GUGCCACAGG--------------CGCCuCGc -5'
25172 3' -54.9 NC_005336.1 + 104046 0.66 0.910165
Target:  5'- gGCaUCAuccugaaGCGGcaGUUCGCGGAGCGc -3'
miRNA:   3'- aUGaAGUug-----UGCCa-CAGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 16206 0.66 0.910165
Target:  5'- gACUUCAcgaGCACG---UCCGCGG-GCGu -3'
miRNA:   3'- aUGAAGU---UGUGCcacAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 130335 0.67 0.903934
Target:  5'- gGCgcgAGCcCGGUGcCCGCGGAcGCGc -3'
miRNA:   3'- aUGaagUUGuGCCACaGGCGCCU-CGC- -5'
25172 3' -54.9 NC_005336.1 + 54228 0.67 0.897464
Target:  5'- aGCUUCuGCGCGuc-UCCGCGGAgagcGCGg -3'
miRNA:   3'- aUGAAGuUGUGCcacAGGCGCCU----CGC- -5'
25172 3' -54.9 NC_005336.1 + 21486 0.67 0.897464
Target:  5'- cGCUUCAugGaGGUGgCCGCGcGcGCGg -3'
miRNA:   3'- aUGAAGUugUgCCACaGGCGC-CuCGC- -5'
25172 3' -54.9 NC_005336.1 + 120893 0.67 0.897464
Target:  5'- aAgUUCGACGCGGaGUUCGUGuGGCGc -3'
miRNA:   3'- aUgAAGUUGUGCCaCAGGCGCcUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.