miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25172 3' -54.9 NC_005336.1 + 59417 1.08 0.003754
Target:  5'- gUACUUCAACACGGUGUCCGCGGAGCGg -3'
miRNA:   3'- -AUGAAGUUGUGCCACAGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 130542 0.78 0.329948
Target:  5'- cGCUUCAGCGCGGUGcucaccUCCGUGGAcaucgagaccgcgcuGCGg -3'
miRNA:   3'- aUGAAGUUGUGCCAC------AGGCGCCU---------------CGC- -5'
25172 3' -54.9 NC_005336.1 + 99425 0.77 0.366124
Target:  5'- gACUUCGACGCGGUG-CaCGCGGcGCu -3'
miRNA:   3'- aUGAAGUUGUGCCACaG-GCGCCuCGc -5'
25172 3' -54.9 NC_005336.1 + 103286 0.75 0.482093
Target:  5'- gGCUguu-CACGGUGcCCGUGGAGCu -3'
miRNA:   3'- aUGAaguuGUGCCACaGGCGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 36443 0.73 0.592397
Target:  5'- -cCUUCAGCACcGUGUCCaCGGAGUu -3'
miRNA:   3'- auGAAGUUGUGcCACAGGcGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 115047 0.73 0.592397
Target:  5'- aUGCUUCcuCcCGGUGcCCGCGGGGaCGa -3'
miRNA:   3'- -AUGAAGuuGuGCCACaGGCGCCUC-GC- -5'
25172 3' -54.9 NC_005336.1 + 103902 0.72 0.644228
Target:  5'- ---gUCGACaACGGcauccaccucaUGUUCGCGGAGCGg -3'
miRNA:   3'- augaAGUUG-UGCC-----------ACAGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 30467 0.71 0.664949
Target:  5'- ---aUgGACGCGGUGUCCGCGcucuGCGu -3'
miRNA:   3'- augaAgUUGUGCCACAGGCGCcu--CGC- -5'
25172 3' -54.9 NC_005336.1 + 86876 0.71 0.679393
Target:  5'- aGCUUCGggcgcgucuccgaguACACGGUGagcagccgcaucUCCGCGGAGa- -3'
miRNA:   3'- aUGAAGU---------------UGUGCCAC------------AGGCGCCUCgc -5'
25172 3' -54.9 NC_005336.1 + 94270 0.71 0.689664
Target:  5'- gUGCUcgaCGGCGCGGUGUCCagcccgcugggcgugGCGGGGUc -3'
miRNA:   3'- -AUGAa--GUUGUGCCACAGG---------------CGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 22691 0.71 0.695804
Target:  5'- aACUUCAACcccGCGGUGgUCGCGGccauGCGc -3'
miRNA:   3'- aUGAAGUUG---UGCCACaGGCGCCu---CGC- -5'
25172 3' -54.9 NC_005336.1 + 55068 0.71 0.705991
Target:  5'- gACgcgUUGACGCacguuGGUGUCCGCGGcAGCc -3'
miRNA:   3'- aUGa--AGUUGUG-----CCACAGGCGCC-UCGc -5'
25172 3' -54.9 NC_005336.1 + 30399 0.71 0.705991
Target:  5'- -cCUUC-GCGCGGcUGcgcgCCGCGGAGCu -3'
miRNA:   3'- auGAAGuUGUGCC-ACa---GGCGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 71175 0.71 0.716114
Target:  5'- gACgggCAGCGCGGgcgcGUUCGCGG-GCGu -3'
miRNA:   3'- aUGaa-GUUGUGCCa---CAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 95831 0.71 0.716114
Target:  5'- cGCgcCAugGCGGcGUCCGUGG-GCGg -3'
miRNA:   3'- aUGaaGUugUGCCaCAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 109437 0.7 0.726163
Target:  5'- gUGCgcagCAGCuccuCGGUGUCCGCGcGcAGCa -3'
miRNA:   3'- -AUGaa--GUUGu---GCCACAGGCGC-C-UCGc -5'
25172 3' -54.9 NC_005336.1 + 41633 0.7 0.755772
Target:  5'- aACgcaGACACGGUGUC-GCGGAucGCGc -3'
miRNA:   3'- aUGaagUUGUGCCACAGgCGCCU--CGC- -5'
25172 3' -54.9 NC_005336.1 + 3507 0.69 0.784371
Target:  5'- gGCcggCAGCgGCGGcG-CCGCGGGGCGg -3'
miRNA:   3'- aUGaa-GUUG-UGCCaCaGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 53734 0.69 0.784371
Target:  5'- cGCUcgUCAGCAUGGUGcCCGUGcucgaGAGCu -3'
miRNA:   3'- aUGA--AGUUGUGCCACaGGCGC-----CUCGc -5'
25172 3' -54.9 NC_005336.1 + 3507 0.69 0.784371
Target:  5'- gGCcggCAGCgGCGGcG-CCGCGGGGCGg -3'
miRNA:   3'- aUGaa-GUUG-UGCCaCaGGCGCCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.