miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25172 3' -54.9 NC_005336.1 + 54228 0.67 0.897464
Target:  5'- aGCUUCuGCGCGuc-UCCGCGGAgagcGCGg -3'
miRNA:   3'- aUGAAGuUGUGCcacAGGCGCCU----CGC- -5'
25172 3' -54.9 NC_005336.1 + 66659 0.67 0.890071
Target:  5'- cUACUUCAccaaccgacgcacGCGCGGg--CCGCuGGGCGu -3'
miRNA:   3'- -AUGAAGU-------------UGUGCCacaGGCGcCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 103714 0.67 0.883812
Target:  5'- cGCUUCcGCACGcUG-CCGCccgaGGAGCGc -3'
miRNA:   3'- aUGAAGuUGUGCcACaGGCG----CCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 130849 0.67 0.876641
Target:  5'- cUACUUCAuccugaACGCGGacagaGcCCGCGuGGGCGa -3'
miRNA:   3'- -AUGAAGU------UGUGCCa----CaGGCGC-CUCGC- -5'
25172 3' -54.9 NC_005336.1 + 23553 0.67 0.876641
Target:  5'- gACgUUCAggACAcCGGU-UCCGCGGGGUGu -3'
miRNA:   3'- aUG-AAGU--UGU-GCCAcAGGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 56479 0.67 0.869244
Target:  5'- cGCgagGACAUGGUuUCCGCcGGGGCGc -3'
miRNA:   3'- aUGaagUUGUGCCAcAGGCG-CCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 118228 0.67 0.869244
Target:  5'- cGCgUCGcGCACGGgcucgccGUCCGCGaaGAGCGg -3'
miRNA:   3'- aUGaAGU-UGUGCCa------CAGGCGC--CUCGC- -5'
25172 3' -54.9 NC_005336.1 + 37650 0.67 0.869244
Target:  5'- -cCUUCu---CGGUGUCCGgCGGcGCGg -3'
miRNA:   3'- auGAAGuuguGCCACAGGC-GCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 44103 0.68 0.8538
Target:  5'- gUGCUgcgGACGCGcGUuuGUgCGCGGAGCGc -3'
miRNA:   3'- -AUGAag-UUGUGC-CA--CAgGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 51449 0.68 0.8538
Target:  5'- -cCUUacGC-CGGUGUUCGUGGAGCc -3'
miRNA:   3'- auGAAguUGuGCCACAGGCGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 13875 0.68 0.8538
Target:  5'- ---gUCGGCACGcGgcgcGUCCGCGG-GCGc -3'
miRNA:   3'- augaAGUUGUGC-Ca---CAGGCGCCuCGC- -5'
25172 3' -54.9 NC_005336.1 + 127092 0.68 0.85061
Target:  5'- gACccCGACGCGGUGcgacugcugcucgCCGCGGGcGCGg -3'
miRNA:   3'- aUGaaGUUGUGCCACa------------GGCGCCU-CGC- -5'
25172 3' -54.9 NC_005336.1 + 5915 0.68 0.845764
Target:  5'- gUGCggCGGCGuCGGgggcGUCCGCGGcGGCa -3'
miRNA:   3'- -AUGaaGUUGU-GCCa---CAGGCGCC-UCGc -5'
25172 3' -54.9 NC_005336.1 + 76906 0.68 0.845764
Target:  5'- cGC-UCGGCGCGGcGUuuGgaGGAGCGg -3'
miRNA:   3'- aUGaAGUUGUGCCaCAggCg-CCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 68031 0.68 0.834181
Target:  5'- cAC-UCGGgGCGGUGgcagcggccgcgcCCGCGGGGCa -3'
miRNA:   3'- aUGaAGUUgUGCCACa------------GGCGCCUCGc -5'
25172 3' -54.9 NC_005336.1 + 124669 0.68 0.829103
Target:  5'- cGCUggaaAGCGCGGUG-CUGCGGcccGCGg -3'
miRNA:   3'- aUGAag--UUGUGCCACaGGCGCCu--CGC- -5'
25172 3' -54.9 NC_005336.1 + 27236 0.69 0.820491
Target:  5'- cGCagCAGCGCGGgGUCCacGCGGuAGCa -3'
miRNA:   3'- aUGaaGUUGUGCCaCAGG--CGCC-UCGc -5'
25172 3' -54.9 NC_005336.1 + 63819 0.69 0.820491
Target:  5'- gUACUUCuacgGGCGCGGaca-CGUGGAGCGg -3'
miRNA:   3'- -AUGAAG----UUGUGCCacagGCGCCUCGC- -5'
25172 3' -54.9 NC_005336.1 + 108342 0.69 0.81524
Target:  5'- -uCUUCGGCGCGGUuaccgggagccugcuGcCCGCGGAGa- -3'
miRNA:   3'- auGAAGUUGUGCCA---------------CaGGCGCCUCgc -5'
25172 3' -54.9 NC_005336.1 + 117626 0.69 0.80635
Target:  5'- aACUUCGACGCGGacgucuacgucgCCGCGGccGGCa -3'
miRNA:   3'- aUGAAGUUGUGCCaca---------GGCGCC--UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.