miRNA display CGI


Results 1 - 20 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25172 5' -62.4 NC_005336.1 + 43271 0.66 0.646722
Target:  5'- cGUGCgGCCGUcGAgGaGCGCGUGCagcacUGGa -3'
miRNA:   3'- aCGCG-CGGCGcCUgC-CGUGCACG-----ACC- -5'
25172 5' -62.4 NC_005336.1 + 104286 0.66 0.646722
Target:  5'- cGCGggaagGCCgGCGGAcacccgcccgaCGGaCGCGUGUUGGc -3'
miRNA:   3'- aCGCg----CGG-CGCCU-----------GCC-GUGCACGACC- -5'
25172 5' -62.4 NC_005336.1 + 116440 0.66 0.646722
Target:  5'- cGUGCGCCGCaGGuACcGCGCGaGCUc- -3'
miRNA:   3'- aCGCGCGGCG-CC-UGcCGUGCaCGAcc -5'
25172 5' -62.4 NC_005336.1 + 90532 0.66 0.646722
Target:  5'- cUGCG-GCCGCgagcgcgaGGAUGGCGCaGaUGCcGGg -3'
miRNA:   3'- -ACGCgCGGCG--------CCUGCCGUG-C-ACGaCC- -5'
25172 5' -62.4 NC_005336.1 + 79950 0.66 0.646722
Target:  5'- gGCGCGCgGUGGuccgUGGCGaacacGCUGGc -3'
miRNA:   3'- aCGCGCGgCGCCu---GCCGUgca--CGACC- -5'
25172 5' -62.4 NC_005336.1 + 133590 0.66 0.646722
Target:  5'- cGCGCGCCGgccgccgaCGGAacugcuCGuGCGCGcGCUGc -3'
miRNA:   3'- aCGCGCGGC--------GCCU------GC-CGUGCaCGACc -5'
25172 5' -62.4 NC_005336.1 + 68830 0.66 0.643782
Target:  5'- gUGUGCGgcaucgacccguacCCGCGcGGCGGCccgGCGUGCc-- -3'
miRNA:   3'- -ACGCGC--------------GGCGC-CUGCCG---UGCACGacc -5'
25172 5' -62.4 NC_005336.1 + 101438 0.66 0.643782
Target:  5'- cGCGCG-CGUGGucgcgcucccggacGCGGaCGCGaaGCUGGa -3'
miRNA:   3'- aCGCGCgGCGCC--------------UGCC-GUGCa-CGACC- -5'
25172 5' -62.4 NC_005336.1 + 39004 0.66 0.642802
Target:  5'- aGCGCGuCCGCGagccccGGCGGCGCGaccuccucgaagcGCgUGGc -3'
miRNA:   3'- aCGCGC-GGCGC------CUGCCGUGCa------------CG-ACC- -5'
25172 5' -62.4 NC_005336.1 + 84720 0.66 0.636919
Target:  5'- cGCGgcUGCCGCGGACaccaACGUGCg-- -3'
miRNA:   3'- aCGC--GCGGCGCCUGccg-UGCACGacc -5'
25172 5' -62.4 NC_005336.1 + 110409 0.66 0.636919
Target:  5'- gGCG-GCCGCGG-CGGCgGCGUcGCc-- -3'
miRNA:   3'- aCGCgCGGCGCCuGCCG-UGCA-CGacc -5'
25172 5' -62.4 NC_005336.1 + 100780 0.66 0.636919
Target:  5'- uUGCGCGagaGCGG-CGGCuuuGCGUGUUc- -3'
miRNA:   3'- -ACGCGCgg-CGCCuGCCG---UGCACGAcc -5'
25172 5' -62.4 NC_005336.1 + 28642 0.66 0.636919
Target:  5'- gUGCGUGCC-UGGuguUGaGCACGUGCgcgucGGg -3'
miRNA:   3'- -ACGCGCGGcGCCu--GC-CGUGCACGa----CC- -5'
25172 5' -62.4 NC_005336.1 + 95542 0.66 0.636919
Target:  5'- cGCGCGCCGCGcGCGcGCGCcuccaGCg-- -3'
miRNA:   3'- aCGCGCGGCGCcUGC-CGUGca---CGacc -5'
25172 5' -62.4 NC_005336.1 + 35019 0.66 0.636919
Target:  5'- cGCGCGCCGCGaAgGGCuCGUcgGUcucgGGg -3'
miRNA:   3'- aCGCGCGGCGCcUgCCGuGCA--CGa---CC- -5'
25172 5' -62.4 NC_005336.1 + 62331 0.66 0.636919
Target:  5'- gGCGuCGUCGaaGGCGGUGCGcagaucGCUGGu -3'
miRNA:   3'- aCGC-GCGGCgcCUGCCGUGCa-----CGACC- -5'
25172 5' -62.4 NC_005336.1 + 78850 0.66 0.635939
Target:  5'- -uCGCGCCGUGGaguuuuucgcuucGCaGCGCGUGggGGc -3'
miRNA:   3'- acGCGCGGCGCC-------------UGcCGUGCACgaCC- -5'
25172 5' -62.4 NC_005336.1 + 79656 0.66 0.635939
Target:  5'- -cCGCGCCGCaccccaaGGGCGacCACGUGCUcaaGGc -3'
miRNA:   3'- acGCGCGGCG-------CCUGCc-GUGCACGA---CC- -5'
25172 5' -62.4 NC_005336.1 + 127929 0.66 0.633977
Target:  5'- cGCGCGCCGUGcGCacagcgcugcccuuGGCGcCGgacgcGCUGGu -3'
miRNA:   3'- aCGCGCGGCGCcUG--------------CCGU-GCa----CGACC- -5'
25172 5' -62.4 NC_005336.1 + 48733 0.66 0.631036
Target:  5'- gGaCGCGCuCGCGGcCGGCAaggagccccuccgcgUGUGCUu- -3'
miRNA:   3'- aC-GCGCG-GCGCCuGCCGU---------------GCACGAcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.