miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25172 5' -62.4 NC_005336.1 + 59451 1.09 0.000779
Target:  5'- cUGCGCGCCGCGGACGGCACGUGCUGGu -3'
miRNA:   3'- -ACGCGCGGCGCCUGCCGUGCACGACC- -5'
25172 5' -62.4 NC_005336.1 + 44859 0.86 0.033726
Target:  5'- gGCGCGcCCGCGGGCGucCGCGUGCUGGu -3'
miRNA:   3'- aCGCGC-GGCGCCUGCc-GUGCACGACC- -5'
25172 5' -62.4 NC_005336.1 + 135978 0.84 0.0438
Target:  5'- cUGCGCGCgGCGGGCGcGCGCGggcagcgGCUGGc -3'
miRNA:   3'- -ACGCGCGgCGCCUGC-CGUGCa------CGACC- -5'
25172 5' -62.4 NC_005336.1 + 135978 0.84 0.0438
Target:  5'- cUGCGCGCgGCGGGCGcGCGCGggcagcgGCUGGc -3'
miRNA:   3'- -ACGCGCGgCGCCUGC-CGUGCa------CGACC- -5'
25172 5' -62.4 NC_005336.1 + 68504 0.81 0.07349
Target:  5'- cUGCGCGCguuCGCGGugGGCugGUuuggcgcgcaGCUGGg -3'
miRNA:   3'- -ACGCGCG---GCGCCugCCGugCA----------CGACC- -5'
25172 5' -62.4 NC_005336.1 + 109749 0.81 0.075399
Target:  5'- gUGCGCGCCGUGGACGGCcuGCGcGCa-- -3'
miRNA:   3'- -ACGCGCGGCGCCUGCCG--UGCaCGacc -5'
25172 5' -62.4 NC_005336.1 + 85875 0.8 0.087885
Target:  5'- gUGCGCGUCGCGGACGcGguCGUGCg-- -3'
miRNA:   3'- -ACGCGCGGCGCCUGC-CguGCACGacc -5'
25172 5' -62.4 NC_005336.1 + 133119 0.8 0.094844
Target:  5'- cGUGaCGCCGCuGGCGGCGC-UGCUGGg -3'
miRNA:   3'- aCGC-GCGGCGcCUGCCGUGcACGACC- -5'
25172 5' -62.4 NC_005336.1 + 455 0.8 0.094844
Target:  5'- cGCGUGCCGCGGGCGGCcgcGCGUccGCgacGGc -3'
miRNA:   3'- aCGCGCGGCGCCUGCCG---UGCA--CGa--CC- -5'
25172 5' -62.4 NC_005336.1 + 455 0.8 0.094844
Target:  5'- cGCGUGCCGCGGGCGGCcgcGCGUccGCgacGGc -3'
miRNA:   3'- aCGCGCGGCGCCUGCCG---UGCA--CGa--CC- -5'
25172 5' -62.4 NC_005336.1 + 74855 0.79 0.097278
Target:  5'- cGCGCGCUGCGcGGCGcGCcuGCGcUGCUGGg -3'
miRNA:   3'- aCGCGCGGCGC-CUGC-CG--UGC-ACGACC- -5'
25172 5' -62.4 NC_005336.1 + 59148 0.79 0.09977
Target:  5'- cGUGCGCCGCGGcGCgGGCgACG-GCUGGa -3'
miRNA:   3'- aCGCGCGGCGCC-UG-CCG-UGCaCGACC- -5'
25172 5' -62.4 NC_005336.1 + 29595 0.79 0.104937
Target:  5'- gUGCGCuGCUGCGGGCGcuGCGCGUGCUc- -3'
miRNA:   3'- -ACGCG-CGGCGCCUGC--CGUGCACGAcc -5'
25172 5' -62.4 NC_005336.1 + 124256 0.79 0.110354
Target:  5'- -cCGCGCCGCGcGCGGCGCGaUGCUGc -3'
miRNA:   3'- acGCGCGGCGCcUGCCGUGC-ACGACc -5'
25172 5' -62.4 NC_005336.1 + 100883 0.78 0.118973
Target:  5'- gGCGCGCgCGCGGuCGGCGCG-GCgcGGa -3'
miRNA:   3'- aCGCGCG-GCGCCuGCCGUGCaCGa-CC- -5'
25172 5' -62.4 NC_005336.1 + 71938 0.78 0.121983
Target:  5'- cGCgGCGCUgGCGuGGCGGCACGUGCUcguGGa -3'
miRNA:   3'- aCG-CGCGG-CGC-CUGCCGUGCACGA---CC- -5'
25172 5' -62.4 NC_005336.1 + 6272 0.78 0.131441
Target:  5'- cGCGCcgGCCGCGGucacgcugaGCGcGCGCGUGCUGu -3'
miRNA:   3'- aCGCG--CGGCGCC---------UGC-CGUGCACGACc -5'
25172 5' -62.4 NC_005336.1 + 68292 0.77 0.138117
Target:  5'- aGC-CGCUGCGGGC-GUGCGUGCUGGc -3'
miRNA:   3'- aCGcGCGGCGCCUGcCGUGCACGACC- -5'
25172 5' -62.4 NC_005336.1 + 36078 0.77 0.138117
Target:  5'- cGCGCGCUccuCGGGCGGCAgCGUGC-GGa -3'
miRNA:   3'- aCGCGCGGc--GCCUGCCGU-GCACGaCC- -5'
25172 5' -62.4 NC_005336.1 + 42638 0.77 0.141571
Target:  5'- cGCgGCGCCGCGGaggucuucgaccGCGGCuccgGCGUGCUGc -3'
miRNA:   3'- aCG-CGCGGCGCC------------UGCCG----UGCACGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.