Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 32939 | 0.66 | 0.999995 |
|
Target: 5'- uGGGAAGUaauGCUUCAUuUUUaUGGUCGg -3' miRNA: 3'- -CUCUUCA---UGAAGUGcAAGaACUAGCa -5' |
|||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 37604 | 0.66 | 0.999985 |
|
Target: 5'- gGAGggGUcCagCGCGUUCUUGuuccCGUa -3' miRNA: 3'- -CUCuuCAuGaaGUGCAAGAACua--GCA- -5' |
|||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 121219 | 0.68 | 0.999832 |
|
Target: 5'- gGAGGAGUACgugcgccggUUCGCGUUCUcgGGcUCGc -3' miRNA: 3'- -CUCUUCAUG---------AAGUGCAAGAa-CU-AGCa -5' |
|||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 87278 | 0.7 | 0.999116 |
|
Target: 5'- cGAGGAcUGCUUCACGUUgUUGAacaUCa- -3' miRNA: 3'- -CUCUUcAUGAAGUGCAAgAACU---AGca -5' |
|||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 88884 | 0.74 | 0.980848 |
|
Target: 5'- cGAGAcGUACUUCGCGUUCgUGG-CGc -3' miRNA: 3'- -CUCUuCAUGAAGUGCAAGaACUaGCa -5' |
|||||||
| 25192 | 3' | -45.1 | NC_005336.1 | + | 52480 | 1.1 | 0.028031 |
|
Target: 5'- cGAGAAGUACUUCACGUUCUUGAUCGUg -3' miRNA: 3'- -CUCUUCAUGAAGUGCAAGAACUAGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home