miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25199 5' -56.5 NC_005336.1 + 39958 0.66 0.873011
Target:  5'- cGGaCAcgCCgcgCAgGUCCAUGUCCUGUa -3'
miRNA:   3'- uCCcGUa-GGa--GUaCAGGUACGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 105550 0.66 0.873011
Target:  5'- gGGGGCAggCUCccGUCCA-GCgCgUGCc -3'
miRNA:   3'- -UCCCGUagGAGuaCAGGUaCG-GgACG- -5'
25199 5' -56.5 NC_005336.1 + 76306 0.66 0.865521
Target:  5'- uGGGCcgCCUCc-GUCagaGCCUUGCc -3'
miRNA:   3'- uCCCGuaGGAGuaCAGguaCGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 66403 0.66 0.865521
Target:  5'- uGGGCcUCCgcagCGUGgUCGUGCCCg-- -3'
miRNA:   3'- uCCCGuAGGa---GUACaGGUACGGGacg -5'
25199 5' -56.5 NC_005336.1 + 55668 0.66 0.86476
Target:  5'- cGGuGGUcuGUCCUCccgcugcgccggcGUGUCCGgcuccgGCuCCUGCg -3'
miRNA:   3'- -UC-CCG--UAGGAG-------------UACAGGUa-----CG-GGACG- -5'
25199 5' -56.5 NC_005336.1 + 37428 0.66 0.857817
Target:  5'- uGGGCAccacCUUgGUGUUCAcGCCCgUGCu -3'
miRNA:   3'- uCCCGUa---GGAgUACAGGUaCGGG-ACG- -5'
25199 5' -56.5 NC_005336.1 + 133395 0.66 0.857817
Target:  5'- cGGaGU-UCCUCAaGUUCGUGuUCCUGCa -3'
miRNA:   3'- uCC-CGuAGGAGUaCAGGUAC-GGGACG- -5'
25199 5' -56.5 NC_005336.1 + 50305 0.66 0.857817
Target:  5'- cGGGGCcaucgaCCUCAugcggcaccUGUUCAUGCacuuCUGCg -3'
miRNA:   3'- -UCCCGua----GGAGU---------ACAGGUACGg---GACG- -5'
25199 5' -56.5 NC_005336.1 + 14512 0.66 0.857035
Target:  5'- uAGGGCucgauGUUCUCGcgcgcguUGUCCAccUCCUGCa -3'
miRNA:   3'- -UCCCG-----UAGGAGU-------ACAGGUacGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 49690 0.66 0.849903
Target:  5'- cGGGCAUCagcagccgCAcaacGUCCAUGUagcaggCCUGCg -3'
miRNA:   3'- uCCCGUAGga------GUa---CAGGUACG------GGACG- -5'
25199 5' -56.5 NC_005336.1 + 133976 0.66 0.841787
Target:  5'- --cGCcggCCUCAUGUgcCCGUgcGCCCUGCc -3'
miRNA:   3'- uccCGua-GGAGUACA--GGUA--CGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 40413 0.66 0.833476
Target:  5'- -aGGCGUCCgagucCAUgauggcGUCCAUGUCCUcgGCg -3'
miRNA:   3'- ucCCGUAGGa----GUA------CAGGUACGGGA--CG- -5'
25199 5' -56.5 NC_005336.1 + 82247 0.67 0.824978
Target:  5'- uAGGGCA-CCgugugCAUGgCCAUgucGCCCaUGCc -3'
miRNA:   3'- -UCCCGUaGGa----GUACaGGUA---CGGG-ACG- -5'
25199 5' -56.5 NC_005336.1 + 24148 0.67 0.816299
Target:  5'- aAGGGCAccUCCUCGagGUUCGUcugGCCCa-- -3'
miRNA:   3'- -UCCCGU--AGGAGUa-CAGGUA---CGGGacg -5'
25199 5' -56.5 NC_005336.1 + 70937 0.67 0.816299
Target:  5'- aAGGGCccgaacccCUUCGUGgccaaCAUGCaCCUGCg -3'
miRNA:   3'- -UCCCGua------GGAGUACag---GUACG-GGACG- -5'
25199 5' -56.5 NC_005336.1 + 128233 0.67 0.779959
Target:  5'- uGGGCAgcgCCUCGcucacgggcggGUCCGUGUCCa-- -3'
miRNA:   3'- uCCCGUa--GGAGUa----------CAGGUACGGGacg -5'
25199 5' -56.5 NC_005336.1 + 111760 0.68 0.770511
Target:  5'- cGGGCGUgggCUUCGUGucacggacUCCAUGCaCgUGCa -3'
miRNA:   3'- uCCCGUA---GGAGUAC--------AGGUACG-GgACG- -5'
25199 5' -56.5 NC_005336.1 + 130933 0.68 0.751247
Target:  5'- gGGGGUGUCCgg--GaUCCAggagGUCCUGCc -3'
miRNA:   3'- -UCCCGUAGGaguaC-AGGUa---CGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 11881 0.68 0.741449
Target:  5'- gAGGGUg--CUCAUGU---UGCCCUGCg -3'
miRNA:   3'- -UCCCGuagGAGUACAgguACGGGACG- -5'
25199 5' -56.5 NC_005336.1 + 50273 0.68 0.731553
Target:  5'- cGGGCAgccgccgCCgUCGgccgCgAUGCCCUGCg -3'
miRNA:   3'- uCCCGUa------GG-AGUaca-GgUACGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.