miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
252 3' -58.8 AC_000008.1 + 10041 0.66 0.335045
Target:  5'- --aCCCCGgAGCCGCGGACUUUuCg- -3'
miRNA:   3'- aaaGGGGCgUUGGCGUCUGGGAcGau -5'
252 3' -58.8 AC_000008.1 + 16210 0.66 0.326732
Target:  5'- --gCCCaacgCGCGGCgGCGG-CCCUGCUu -3'
miRNA:   3'- aaaGGG----GCGUUGgCGUCuGGGACGAu -5'
252 3' -58.8 AC_000008.1 + 30297 0.67 0.318572
Target:  5'- cUUUCCCCGCGcCCGCuaugcuuCCaCUGCa- -3'
miRNA:   3'- -AAAGGGGCGUuGGCGucu----GG-GACGau -5'
252 3' -58.8 AC_000008.1 + 23127 0.67 0.280081
Target:  5'- -gUCCCCGCGGCacguugGCGGGCUgUGUa- -3'
miRNA:   3'- aaAGGGGCGUUGg-----CGUCUGGgACGau -5'
252 3' -58.8 AC_000008.1 + 11189 0.68 0.272842
Target:  5'- --cCCCCGCGGCgC-CGGGCCCgGCa- -3'
miRNA:   3'- aaaGGGGCGUUG-GcGUCUGGGaCGau -5'
252 3' -58.8 AC_000008.1 + 12952 0.68 0.265753
Target:  5'- -cUCCCacagGCGACCGCGcGACCUgucuagcuUGCUGa -3'
miRNA:   3'- aaAGGGg---CGUUGGCGU-CUGGG--------ACGAU- -5'
252 3' -58.8 AC_000008.1 + 12437 0.68 0.258813
Target:  5'- gUUCCggcaGCAGCCGCAGGCCaaccgGCUc -3'
miRNA:   3'- aAAGGgg--CGUUGGCGUCUGGga---CGAu -5'
252 3' -58.8 AC_000008.1 + 5591 0.69 0.22632
Target:  5'- ---aUCCGC-GCCGCAGGCCCcGCa- -3'
miRNA:   3'- aaagGGGCGuUGGCGUCUGGGaCGau -5'
252 3' -58.8 AC_000008.1 + 3354 0.73 0.111698
Target:  5'- ---aCCCGCAccaGgUGCAGACCCUGCg- -3'
miRNA:   3'- aaagGGGCGU---UgGCGUCUGGGACGau -5'
252 3' -58.8 AC_000008.1 + 26131 0.73 0.105058
Target:  5'- --gCCCUaucagcaGCAGCCGCGGGCCCUuGCUu -3'
miRNA:   3'- aaaGGGG-------CGUUGGCGUCUGGGA-CGAu -5'
252 3' -58.8 AC_000008.1 + 13562 1.04 0.0004
Target:  5'- uUUUCCCCGCAACCGCAGACCCUGCUAg -3'
miRNA:   3'- -AAAGGGGCGUUGGCGUCUGGGACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.