miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
252 5' -59.1 AC_000008.1 + 13604 1.09 0.000186
Target:  5'- gAGCAGGCAGAGGCGGCGCUGCGAAAGg -3'
miRNA:   3'- -UCGUCCGUCUCCGCCGCGACGCUUUC- -5'
252 5' -59.1 AC_000008.1 + 15045 0.74 0.098728
Target:  5'- --aGGGCGGGGGUGGCGCagGCGgcAGc -3'
miRNA:   3'- ucgUCCGUCUCCGCCGCGa-CGCuuUC- -5'
252 5' -59.1 AC_000008.1 + 9740 0.73 0.106748
Target:  5'- uGGCGGGCGGcagcGGGCGGCGgUcgggguuguuucugGCGGAGGu -3'
miRNA:   3'- -UCGUCCGUC----UCCGCCGCgA--------------CGCUUUC- -5'
252 5' -59.1 AC_000008.1 + 22145 0.73 0.107676
Target:  5'- cAGCAGGCGcGGGCgGGUGgUGCGAGu- -3'
miRNA:   3'- -UCGUCCGUcUCCG-CCGCgACGCUUuc -5'
252 5' -59.1 AC_000008.1 + 12328 0.73 0.117381
Target:  5'- cGGCGGuGC--GGGCGGCGCUGC-AGAGc -3'
miRNA:   3'- -UCGUC-CGucUCCGCCGCGACGcUUUC- -5'
252 5' -59.1 AC_000008.1 + 17260 0.72 0.127896
Target:  5'- cGguGGCGGAugccgcggugcaGGCGGuCGCUGCGGc-- -3'
miRNA:   3'- uCguCCGUCU------------CCGCC-GCGACGCUuuc -5'
252 5' -59.1 AC_000008.1 + 15181 0.72 0.139277
Target:  5'- aAGCAuGGCcucaagcguGGAGGCGGUGUUGUGGGc- -3'
miRNA:   3'- -UCGU-CCG---------UCUCCGCCGCGACGCUUuc -5'
252 5' -59.1 AC_000008.1 + 8662 0.72 0.139277
Target:  5'- cGCGGGCAGGaGCuGGUGCUGCGc--- -3'
miRNA:   3'- uCGUCCGUCUcCG-CCGCGACGCuuuc -5'
252 5' -59.1 AC_000008.1 + 9464 0.72 0.143273
Target:  5'- -aCGGGCAGugccGGCGGCGCcugaggaGCGGAGGu -3'
miRNA:   3'- ucGUCCGUCu---CCGCCGCGa------CGCUUUC- -5'
252 5' -59.1 AC_000008.1 + 11795 0.72 0.147373
Target:  5'- cGGCAucGGUGGAGGCGGUGgUgGCGAAc- -3'
miRNA:   3'- -UCGU--CCGUCUCCGCCGCgA-CGCUUuc -5'
252 5' -59.1 AC_000008.1 + 26801 0.7 0.184193
Target:  5'- cAGCAGGaGGAGGa-GCGCUGCGucuGGc -3'
miRNA:   3'- -UCGUCCgUCUCCgcCGCGACGCuu-UC- -5'
252 5' -59.1 AC_000008.1 + 8634 0.69 0.235099
Target:  5'- gAGgGGGCAGGGGCacgucGGCGCcGCGn--- -3'
miRNA:   3'- -UCgUCCGUCUCCG-----CCGCGaCGCuuuc -5'
252 5' -59.1 AC_000008.1 + 32292 0.68 0.261289
Target:  5'- uGCucauGGCGGcGGCGGCuGCUGCa---- -3'
miRNA:   3'- uCGu---CCGUCuCCGCCG-CGACGcuuuc -5'
252 5' -59.1 AC_000008.1 + 9694 0.68 0.268197
Target:  5'- cGUGGGUGGcGGCGGCaGCUGCa---- -3'
miRNA:   3'- uCGUCCGUCuCCGCCG-CGACGcuuuc -5'
252 5' -59.1 AC_000008.1 + 6470 0.68 0.278115
Target:  5'- cGUAGGCgcucguugguccagcAGAGGCGGCcGCccuUGCGcGAGc -3'
miRNA:   3'- uCGUCCG---------------UCUCCGCCG-CG---ACGCuUUC- -5'
252 5' -59.1 AC_000008.1 + 7697 0.68 0.282454
Target:  5'- gGGCGGGUgaAGAcGGUGGCGUUuacaggaugGCGAuAGg -3'
miRNA:   3'- -UCGUCCG--UCU-CCGCCGCGA---------CGCUuUC- -5'
252 5' -59.1 AC_000008.1 + 5226 0.67 0.297306
Target:  5'- cGCGGGUuGGGGCGGCuuucGCUGUa---- -3'
miRNA:   3'- uCGUCCGuCUCCGCCG----CGACGcuuuc -5'
252 5' -59.1 AC_000008.1 + 24685 0.67 0.297306
Target:  5'- -cCAGGUAGugccGGGCccGGCGCcGCGggGGu -3'
miRNA:   3'- ucGUCCGUC----UCCG--CCGCGaCGCuuUC- -5'
252 5' -59.1 AC_000008.1 + 10779 0.66 0.337058
Target:  5'- -cCAGGCGc-GGCGGCuGCUGCGcuAGc -3'
miRNA:   3'- ucGUCCGUcuCCGCCG-CGACGCuuUC- -5'
252 5' -59.1 AC_000008.1 + 32079 0.66 0.342081
Target:  5'- cGCGGGCGGuGGCuGCaGCggcugaagcggcgGCGGAGGc -3'
miRNA:   3'- uCGUCCGUCuCCGcCG-CGa------------CGCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.