miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2520	5'	-54.4	NC_001454.1	+	7822	0.66	0.600181
	Target:  5'- cCCCGcGAgccacaggucCAGAccUCAAcGCGGGGCa -3' miRNA:   3'- aGGGCaCU----------GUCUuuAGUU-CGCCCCGc -5'
2520	5'	-54.4	NC_001454.1	+	15554	0.67	0.588798
	Target:  5'- cCCCGgcGGCGGGug-CAguGGCGGGGaCGu -3' miRNA:   3'- aGGGCa-CUGUCUuuaGU--UCGCCCC-GC- -5'
2520	5'	-54.4	NC_001454.1	+	77	0.68	0.532655
	Target:  5'- ---gGUGACguAGAGG-CGGGCGGGGUGg -3' miRNA:   3'- agggCACUG--UCUUUaGUUCGCCCCGC- -5'
2520	5'	-54.4	NC_001454.1	+	34138	0.68	0.532655
	Target:  5'- ---gGUGACguAGAGG-CGGGCGGGGUGg -3' miRNA:   3'- agggCACUG--UCUUUaGUUCGCCCCGC- -5'
2520	5'	-54.4	NC_001454.1	+	25705	0.75	0.196876
	Target:  5'- gUCgCGUGGCAGAAGgacuguGGuCGGGGCGg -3' miRNA:   3'- -AGgGCACUGUCUUUagu---UC-GCCCCGC- -5'
2520	5'	-54.4	NC_001454.1	+	31973	0.77	0.13225
	Target:  5'- cCCCGgaGACAGGGAUUAcuGCGGGGCu -3' miRNA:   3'- aGGGCa-CUGUCUUUAGUu-CGCCCCGc -5'
2520	5'	-54.4	NC_001454.1	+	30418	0.78	0.121216
	Target:  5'- gCCCGUGuCAGc-AUUAAGUGGGGCGu -3' miRNA:   3'- aGGGCACuGUCuuUAGUUCGCCCCGC- -5'
2520	5'	-54.4	NC_001454.1	+	15828	1.09	0.000674
	Target:  5'- uUCCCGUGACAGAAAUCAAGCGGGGCGu -3' miRNA:   3'- -AGGGCACUGUCUUUAGUUCGCCCCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home