miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25201 3' -50.8 NC_005336.1 + 134556 0.66 0.993963
Target:  5'- ----cCGACCGCGGCGAC-UCugGa- -3'
miRNA:   3'- gagaaGCUGGUGCUGUUGcAGugCau -5'
25201 3' -50.8 NC_005336.1 + 100926 0.66 0.993963
Target:  5'- uUCUUCGACguaCACGugGGCGaggaCGCGg- -3'
miRNA:   3'- gAGAAGCUG---GUGCugUUGCa---GUGCau -5'
25201 3' -50.8 NC_005336.1 + 15742 0.66 0.993963
Target:  5'- gCUCUUCGcugagcgagcGCCGCGGCcgcgcgacgcGACaGUCGCGg- -3'
miRNA:   3'- -GAGAAGC----------UGGUGCUG----------UUG-CAGUGCau -5'
25201 3' -50.8 NC_005336.1 + 41558 0.66 0.993963
Target:  5'- uUCUUCGcGCCgGCGGCGgaGCGcUCGCGg- -3'
miRNA:   3'- gAGAAGC-UGG-UGCUGU--UGC-AGUGCau -5'
25201 3' -50.8 NC_005336.1 + 100953 0.66 0.993963
Target:  5'- uUCcgcgCGACCGCGACcacGAUGUCGCc-- -3'
miRNA:   3'- gAGaa--GCUGGUGCUG---UUGCAGUGcau -5'
25201 3' -50.8 NC_005336.1 + 98446 0.66 0.993019
Target:  5'- gUCcUCGACCaccguggugacGCGGCGGCGUCuGCGc- -3'
miRNA:   3'- gAGaAGCUGG-----------UGCUGUUGCAG-UGCau -5'
25201 3' -50.8 NC_005336.1 + 38542 0.66 0.993019
Target:  5'- cCUCUUCGgcggcuucgagcGCCugGACGcCGUuCGCGa- -3'
miRNA:   3'- -GAGAAGC------------UGGugCUGUuGCA-GUGCau -5'
25201 3' -50.8 NC_005336.1 + 46764 0.66 0.993019
Target:  5'- gCUC-UCGAgCCACcACGugGUCAgCGUGg -3'
miRNA:   3'- -GAGaAGCU-GGUGcUGUugCAGU-GCAU- -5'
25201 3' -50.8 NC_005336.1 + 38426 0.66 0.993019
Target:  5'- ----aUGGCCGCGAUgacgcggaagGugGUCGCGUAg -3'
miRNA:   3'- gagaaGCUGGUGCUG----------UugCAGUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 90353 0.66 0.991961
Target:  5'- gUC-UCGGugaGCGACAACGUgCGCGUGa -3'
miRNA:   3'- gAGaAGCUgg-UGCUGUUGCA-GUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 99543 0.66 0.991961
Target:  5'- -gCUUCGugCGCGu--GCGcCGCGUGg -3'
miRNA:   3'- gaGAAGCugGUGCuguUGCaGUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 71228 0.66 0.991961
Target:  5'- aCUCgcgCGGCCgccGCGcACAACGUCGaGUAc -3'
miRNA:   3'- -GAGaa-GCUGG---UGC-UGUUGCAGUgCAU- -5'
25201 3' -50.8 NC_005336.1 + 75304 0.66 0.991961
Target:  5'- -gCgcgCGACCACGAagugcACGuUCACGUAg -3'
miRNA:   3'- gaGaa-GCUGGUGCUgu---UGC-AGUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 57708 0.66 0.99078
Target:  5'- --aUUCGACCuCGAgGACGUgaACGUGg -3'
miRNA:   3'- gagAAGCUGGuGCUgUUGCAg-UGCAU- -5'
25201 3' -50.8 NC_005336.1 + 100195 0.66 0.99078
Target:  5'- -cCUUCGACCugGGC-ACG-CGCa-- -3'
miRNA:   3'- gaGAAGCUGGugCUGuUGCaGUGcau -5'
25201 3' -50.8 NC_005336.1 + 19593 0.66 0.99078
Target:  5'- gCUCUUCGAgCAgGuCcucgGGCGUUACGUGc -3'
miRNA:   3'- -GAGAAGCUgGUgCuG----UUGCAGUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 14155 0.66 0.99078
Target:  5'- uUC-UCGACCACGuucgccACGACG-CGCGg- -3'
miRNA:   3'- gAGaAGCUGGUGC------UGUUGCaGUGCau -5'
25201 3' -50.8 NC_005336.1 + 102064 0.66 0.99078
Target:  5'- -gCUUCGACgaaucUGCGACGGCcgGUCGCGUc -3'
miRNA:   3'- gaGAAGCUG-----GUGCUGUUG--CAGUGCAu -5'
25201 3' -50.8 NC_005336.1 + 115527 0.66 0.990655
Target:  5'- gUCcUCGGCCACGuGCAcgaccucGCG-CGCGUAg -3'
miRNA:   3'- gAGaAGCUGGUGC-UGU-------UGCaGUGCAU- -5'
25201 3' -50.8 NC_005336.1 + 62371 0.66 0.989466
Target:  5'- ----aCGACCACGGCuucgccgguGGCGUCGuCGUGc -3'
miRNA:   3'- gagaaGCUGGUGCUG---------UUGCAGU-GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.