miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25201 5' -63 NC_005336.1 + 94955 0.66 0.565704
Target:  5'- ---gCGGGCGCGC-CgGCGGCgacugCGGCGAg -3'
miRNA:   3'- gagaGCCUGCGCGaG-CGCCG-----GCCGUU- -5'
25201 5' -63 NC_005336.1 + 85882 0.66 0.546329
Target:  5'- gUCUCGGaacacGCGCGCgaacUCGCGcuuccccuccgcGUCGGCGAu -3'
miRNA:   3'- gAGAGCC-----UGCGCG----AGCGC------------CGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 14903 0.66 0.559871
Target:  5'- cCUC-CGGcgcaguuggcugcccGCGCGCcgCGCGGCC-GCGAg -3'
miRNA:   3'- -GAGaGCC---------------UGCGCGa-GCGCCGGcCGUU- -5'
25201 5' -63 NC_005336.1 + 44726 0.66 0.585252
Target:  5'- aUCgaGGACGUGUguccgCGCGGCgCGGUGAu -3'
miRNA:   3'- gAGagCCUGCGCGa----GCGCCG-GCCGUU- -5'
25201 5' -63 NC_005336.1 + 52329 0.66 0.527171
Target:  5'- aUCgCGGGCGCGCgcgaauacgaCGCGGCCuucGCGGa -3'
miRNA:   3'- gAGaGCCUGCGCGa---------GCGCCGGc--CGUU- -5'
25201 5' -63 NC_005336.1 + 123209 0.66 0.575459
Target:  5'- gUCgUGGACGCGCU-GCuggacGCCGGCGc -3'
miRNA:   3'- gAGaGCCUGCGCGAgCGc----CGGCCGUu -5'
25201 5' -63 NC_005336.1 + 100409 0.66 0.537679
Target:  5'- gCUCUacgaCGGgcggcgccgcacgcGCGUGCUCGCGGugccgccggccaugaCCGGCAGc -3'
miRNA:   3'- -GAGA----GCC--------------UGCGCGAGCGCC---------------GGCCGUU- -5'
25201 5' -63 NC_005336.1 + 68482 0.66 0.546329
Target:  5'- gCUCUgcgagaaccCGGccaugcugcGCGCGUUCGCGGUgGGCu- -3'
miRNA:   3'- -GAGA---------GCC---------UGCGCGAGCGCCGgCCGuu -5'
25201 5' -63 NC_005336.1 + 115878 0.66 0.575459
Target:  5'- aCUCcgUCGGccuCGCaGCcCGCGGCCGcGCGc -3'
miRNA:   3'- -GAG--AGCCu--GCG-CGaGCGCCGGC-CGUu -5'
25201 5' -63 NC_005336.1 + 139339 0.66 0.565704
Target:  5'- gUCgCGGACGCGCggccgccCGCGGCaC-GCGAg -3'
miRNA:   3'- gAGaGCCUGCGCGa------GCGCCG-GcCGUU- -5'
25201 5' -63 NC_005336.1 + 133749 0.66 0.555992
Target:  5'- gCUCUCGGAgcucacggucuCGUGCUCGCgcgGGaCCuGCGAc -3'
miRNA:   3'- -GAGAGCCU-----------GCGCGAGCG---CC-GGcCGUU- -5'
25201 5' -63 NC_005336.1 + 38155 0.66 0.540557
Target:  5'- gCUCUCGGACGUagccGCgCGCauggucgacgacgagGGCCGcGCGGu -3'
miRNA:   3'- -GAGAGCCUGCG----CGaGCG---------------CCGGC-CGUU- -5'
25201 5' -63 NC_005336.1 + 100155 0.66 0.555992
Target:  5'- gCUCUCGGcgaucGCGCGCgCGCaGCCaugaucguGGCGg -3'
miRNA:   3'- -GAGAGCC-----UGCGCGaGCGcCGG--------CCGUu -5'
25201 5' -63 NC_005336.1 + 64069 0.66 0.585252
Target:  5'- cCUCcgCGGACGUcucgcuGCUCGCGgaGCUGcGCGAg -3'
miRNA:   3'- -GAGa-GCCUGCG------CGAGCGC--CGGC-CGUU- -5'
25201 5' -63 NC_005336.1 + 130374 0.66 0.585252
Target:  5'- uUCUCGGcgagcccgaGCGCGCUcugcaCGCGGCCuucguaGCGGa -3'
miRNA:   3'- gAGAGCC---------UGCGCGA-----GCGCCGGc-----CGUU- -5'
25201 5' -63 NC_005336.1 + 112810 0.66 0.585252
Target:  5'- gCUCUCcGACGCGgacCUCgaggagGCGGCaCGGCGc -3'
miRNA:   3'- -GAGAGcCUGCGC---GAG------CGCCG-GCCGUu -5'
25201 5' -63 NC_005336.1 + 130767 0.66 0.582311
Target:  5'- -cCUCgGGGCGCuGCUCgGCGGUgguccgcgccuucgCGGCGAg -3'
miRNA:   3'- gaGAG-CCUGCG-CGAG-CGCCG--------------GCCGUU- -5'
25201 5' -63 NC_005336.1 + 122707 0.66 0.555992
Target:  5'- cCUCgagaCGGACGCGCgcggacacUGCGaGCCcGGCGu -3'
miRNA:   3'- -GAGa---GCCUGCGCGa-------GCGC-CGG-CCGUu -5'
25201 5' -63 NC_005336.1 + 21498 0.66 0.585252
Target:  5'- ---gUGGcCGCGCgCGCGGCCGaGCu- -3'
miRNA:   3'- gagaGCCuGCGCGaGCGCCGGC-CGuu -5'
25201 5' -63 NC_005336.1 + 16031 0.66 0.585252
Target:  5'- gUCggCGGcCGcCGCgUCGCaGCCGGCGg -3'
miRNA:   3'- gAGa-GCCuGC-GCG-AGCGcCGGCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.