miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25201 5' -63 NC_005336.1 + 48727 1.05 0.001034
Target:  5'- gCUCUCGGACGCGCUCGCGGCCGGCAAg -3'
miRNA:   3'- -GAGAGCCUGCGCGAGCGCCGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 127961 0.81 0.059669
Target:  5'- ---cCGGACGCGCUgGUGGCCGGCGc -3'
miRNA:   3'- gagaGCCUGCGCGAgCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 54161 0.76 0.145804
Target:  5'- cCUCgUCGGGCGCGUccggcccgggCGCGGUCGGCGg -3'
miRNA:   3'- -GAG-AGCCUGCGCGa---------GCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 29965 0.76 0.145804
Target:  5'- gCUCgUGGACGCGCUCGCGGCgCuGCu- -3'
miRNA:   3'- -GAGaGCCUGCGCGAGCGCCG-GcCGuu -5'
25201 5' -63 NC_005336.1 + 130151 0.76 0.149463
Target:  5'- gCUCUCGGACgcaGCGCUCGCgcaccaGGCCGcGCu- -3'
miRNA:   3'- -GAGAGCCUG---CGCGAGCG------CCGGC-CGuu -5'
25201 5' -63 NC_005336.1 + 100877 0.75 0.157033
Target:  5'- -cUUCGcGGCGCGCgCGCGGUCGGCGc -3'
miRNA:   3'- gaGAGC-CUGCGCGaGCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 44581 0.75 0.160946
Target:  5'- -cCUgGuGGCgGCGCUCGCGGCUGGCGu -3'
miRNA:   3'- gaGAgC-CUG-CGCGAGCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 103519 0.74 0.177491
Target:  5'- ---cCGGGCGCGCaCGCGGCCGuGCGc -3'
miRNA:   3'- gagaGCCUGCGCGaGCGCCGGC-CGUu -5'
25201 5' -63 NC_005336.1 + 96397 0.74 0.190875
Target:  5'- aCUCgCGGugGCGCgcggCGCGGUCGcGCGu -3'
miRNA:   3'- -GAGaGCCugCGCGa---GCGCCGGC-CGUu -5'
25201 5' -63 NC_005336.1 + 73259 0.74 0.190875
Target:  5'- gCUCUCGGACGCGUacucCGCGcGCCcGCAc -3'
miRNA:   3'- -GAGAGCCUGCGCGa---GCGC-CGGcCGUu -5'
25201 5' -63 NC_005336.1 + 117629 0.73 0.204647
Target:  5'- uUCgacgCGGACGUcuacgucGC-CGCGGCCGGCAu -3'
miRNA:   3'- gAGa---GCCUGCG-------CGaGCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 123508 0.73 0.205137
Target:  5'- gUCUCGGACGCGCggccCGUGaCUGGCGu -3'
miRNA:   3'- gAGAGCCUGCGCGa---GCGCcGGCCGUu -5'
25201 5' -63 NC_005336.1 + 101415 0.73 0.205137
Target:  5'- uUCgcggCGGugGCGgaCGCGGCCGcGCGc -3'
miRNA:   3'- gAGa---GCCugCGCgaGCGCCGGC-CGUu -5'
25201 5' -63 NC_005336.1 + 69959 0.73 0.222407
Target:  5'- gCUCUCGGACGCgagcguguacuucgaGCUCGCGGagcgCGaGCAGc -3'
miRNA:   3'- -GAGAGCCUGCG---------------CGAGCGCCg---GC-CGUU- -5'
25201 5' -63 NC_005336.1 + 98037 0.73 0.22558
Target:  5'- ---cUGGACGCGCUCGCGGUggccgCGGCc- -3'
miRNA:   3'- gagaGCCUGCGCGAGCGCCG-----GCCGuu -5'
25201 5' -63 NC_005336.1 + 121321 0.73 0.22558
Target:  5'- aCUCUgcgccaCGGAgGUGCUCGC-GCCGGCGg -3'
miRNA:   3'- -GAGA------GCCUgCGCGAGCGcCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 15004 0.73 0.236436
Target:  5'- -cCUCGGGCucGCGCggcgCGCGGgCGGCGu -3'
miRNA:   3'- gaGAGCCUG--CGCGa---GCGCCgGCCGUu -5'
25201 5' -63 NC_005336.1 + 48099 0.72 0.247726
Target:  5'- ---aUGGACGCGCggUCGCGGCUGcGCAu -3'
miRNA:   3'- gagaGCCUGCGCG--AGCGCCGGC-CGUu -5'
25201 5' -63 NC_005336.1 + 136239 0.71 0.284277
Target:  5'- -gCUCGG-CGCGCUCGCG-CUGGUg- -3'
miRNA:   3'- gaGAGCCuGCGCGAGCGCcGGCCGuu -5'
25201 5' -63 NC_005336.1 + 130519 0.71 0.284277
Target:  5'- gCUCUCGcGcCGCGCgcgGCGGCUGGCc- -3'
miRNA:   3'- -GAGAGC-CuGCGCGag-CGCCGGCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.