miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25201 5' -63 NC_005336.1 + 5925 0.66 0.555992
Target:  5'- --gUCGGGgGCGUcCGCGGC-GGCAu -3'
miRNA:   3'- gagAGCCUgCGCGaGCGCCGgCCGUu -5'
25201 5' -63 NC_005336.1 + 122707 0.66 0.555992
Target:  5'- cCUCgagaCGGACGCGCgcggacacUGCGaGCCcGGCGu -3'
miRNA:   3'- -GAGa---GCCUGCGCGa-------GCGC-CGG-CCGUu -5'
25201 5' -63 NC_005336.1 + 100155 0.66 0.555992
Target:  5'- gCUCUCGGcgaucGCGCGCgCGCaGCCaugaucguGGCGg -3'
miRNA:   3'- -GAGAGCC-----UGCGCGaGCGcCGG--------CCGUu -5'
25201 5' -63 NC_005336.1 + 85882 0.66 0.546329
Target:  5'- gUCUCGGaacacGCGCGCgaacUCGCGcuuccccuccgcGUCGGCGAu -3'
miRNA:   3'- gAGAGCC-----UGCGCG----AGCGC------------CGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 68482 0.66 0.546329
Target:  5'- gCUCUgcgagaaccCGGccaugcugcGCGCGUUCGCGGUgGGCu- -3'
miRNA:   3'- -GAGA---------GCC---------UGCGCGAGCGCCGgCCGuu -5'
25201 5' -63 NC_005336.1 + 98744 0.66 0.546329
Target:  5'- cCUCgcuGGAcaaCGCGCUCGcCGuGCUGGCGc -3'
miRNA:   3'- -GAGag-CCU---GCGCGAGC-GC-CGGCCGUu -5'
25201 5' -63 NC_005336.1 + 11704 0.66 0.546329
Target:  5'- -cCUCGcaGGCGCGgaUCGCGGCCGcGUg- -3'
miRNA:   3'- gaGAGC--CUGCGCg-AGCGCCGGC-CGuu -5'
25201 5' -63 NC_005336.1 + 125903 0.66 0.546329
Target:  5'- gCUCUCGGGCaagaCGCUCuaCGGCgCGGUg- -3'
miRNA:   3'- -GAGAGCCUGc---GCGAGc-GCCG-GCCGuu -5'
25201 5' -63 NC_005336.1 + 106332 0.66 0.540557
Target:  5'- aUCUCGcaggggcucaucuCGCGCUCGCGGCU-GCAc -3'
miRNA:   3'- gAGAGCcu-----------GCGCGAGCGCCGGcCGUu -5'
25201 5' -63 NC_005336.1 + 38155 0.66 0.540557
Target:  5'- gCUCUCGGACGUagccGCgCGCauggucgacgacgagGGCCGcGCGGu -3'
miRNA:   3'- -GAGAGCCUGCG----CGaGCG---------------CCGGC-CGUU- -5'
25201 5' -63 NC_005336.1 + 100409 0.66 0.537679
Target:  5'- gCUCUacgaCGGgcggcgccgcacgcGCGUGCUCGCGGugccgccggccaugaCCGGCAGc -3'
miRNA:   3'- -GAGA----GCC--------------UGCGCGAGCGCC---------------GGCCGUU- -5'
25201 5' -63 NC_005336.1 + 52329 0.66 0.527171
Target:  5'- aUCgCGGGCGCGCgcgaauacgaCGCGGCCuucGCGGa -3'
miRNA:   3'- gAGaGCCUGCGCGa---------GCGCCGGc--CGUU- -5'
25201 5' -63 NC_005336.1 + 71903 0.67 0.521472
Target:  5'- ---cUGGugGCGCUCGCGcccagccuggaccgcGUCGGCGc -3'
miRNA:   3'- gagaGCCugCGCGAGCGC---------------CGGCCGUu -5'
25201 5' -63 NC_005336.1 + 7468 0.67 0.517686
Target:  5'- -aCUgGGACGCcCUCGCcggaGCCGGUGAg -3'
miRNA:   3'- gaGAgCCUGCGcGAGCGc---CGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 103593 0.67 0.517686
Target:  5'- ---gCGGGCGC---UGCGGCCGGCGg -3'
miRNA:   3'- gagaGCCUGCGcgaGCGCCGGCCGUu -5'
25201 5' -63 NC_005336.1 + 61427 0.67 0.516741
Target:  5'- aUCUCGGccgcgaaGCGaCGCUCGUacuccuGCCGGCGc -3'
miRNA:   3'- gAGAGCC-------UGC-GCGAGCGc-----CGGCCGUu -5'
25201 5' -63 NC_005336.1 + 91745 0.67 0.509208
Target:  5'- ---cCGGGCGCGaaagccgaucucggCGgGGCCGGCGAu -3'
miRNA:   3'- gagaGCCUGCGCga------------GCgCCGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 113440 0.67 0.50827
Target:  5'- cCUCgCGGACuccgcgGCGCgCGCGcCCGGCGAc -3'
miRNA:   3'- -GAGaGCCUG------CGCGaGCGCcGGCCGUU- -5'
25201 5' -63 NC_005336.1 + 125622 0.67 0.50827
Target:  5'- ---aCGGACGCGCg-GCGuaCGGCAu -3'
miRNA:   3'- gagaGCCUGCGCGagCGCcgGCCGUu -5'
25201 5' -63 NC_005336.1 + 93610 0.67 0.50827
Target:  5'- cCUCgUGGAgGCGCUggCGCGGCugcguCGGCGc -3'
miRNA:   3'- -GAGaGCCUgCGCGA--GCGCCG-----GCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.