miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25202 3' -57.4 NC_005336.1 + 132954 0.66 0.835183
Target:  5'- cGAGGUcGCgcggCuGCUGCUggacgCGGGCGCGcGCg -3'
miRNA:   3'- -CUCCA-CGa---G-UGAUGGa----GUCCGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 74866 0.66 0.835183
Target:  5'- -cGGcGCgccugCGCUGCUg-GGGCGCGGCc -3'
miRNA:   3'- cuCCaCGa----GUGAUGGagUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 86735 0.66 0.834349
Target:  5'- ----aGCUCACUAUCUCGGacacgguGCGCaGACg -3'
miRNA:   3'- cuccaCGAGUGAUGGAGUC-------CGCG-CUG- -5'
25202 3' -57.4 NC_005336.1 + 15659 0.66 0.826764
Target:  5'- -cGGcUGCUCGCUgcgcgaucGCgUCAGcCGCGGCg -3'
miRNA:   3'- cuCC-ACGAGUGA--------UGgAGUCcGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 89118 0.66 0.818166
Target:  5'- gGAGGccgagcgGCUCACgcccgugugcgACCUCGcGCGCGAg -3'
miRNA:   3'- -CUCCa------CGAGUGa----------UGGAGUcCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 30806 0.66 0.818166
Target:  5'- aGAGGUaGUgCGCgACCgcgCGGGCGCGcACc -3'
miRNA:   3'- -CUCCA-CGaGUGaUGGa--GUCCGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 5987 0.66 0.809397
Target:  5'- cGGGUGCUCGa----UgGGGUGCGGCg -3'
miRNA:   3'- cUCCACGAGUgauggAgUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 120438 0.66 0.800464
Target:  5'- aAGuGUGgaCaccacuACUACCUCGGGCGCuacGACg -3'
miRNA:   3'- cUC-CACgaG------UGAUGGAGUCCGCG---CUG- -5'
25202 3' -57.4 NC_005336.1 + 6084 0.66 0.800464
Target:  5'- ----cGCUCGCUccGCCagCAGGCGCG-Cg -3'
miRNA:   3'- cuccaCGAGUGA--UGGa-GUCCGCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 64786 0.66 0.800464
Target:  5'- -cGGUGCgcaaggGCUuCCUCGaGCGCGGCg -3'
miRNA:   3'- cuCCACGag----UGAuGGAGUcCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 69477 0.66 0.800464
Target:  5'- -cGGUGagcuUCACgACCUCGGaCGCGAUg -3'
miRNA:   3'- cuCCACg---AGUGaUGGAGUCcGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 122605 0.66 0.800464
Target:  5'- cGAGGagGC-CGC-GCCgauGGCGCGACa -3'
miRNA:   3'- -CUCCa-CGaGUGaUGGaguCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 38824 0.66 0.791377
Target:  5'- cGAGGagcGCUCGCggucgaagAUCUCcgcGGUGCGGCg -3'
miRNA:   3'- -CUCCa--CGAGUGa-------UGGAGu--CCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 55236 0.66 0.791377
Target:  5'- aAGGUGUUCgugaACUACCUCAccagcaaGCGCGuGCg -3'
miRNA:   3'- cUCCACGAG----UGAUGGAGUc------CGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 53030 0.66 0.791377
Target:  5'- -uGGUGC--ACUGCUgcgaAGGCGCGAUc -3'
miRNA:   3'- cuCCACGagUGAUGGag--UCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 29410 0.67 0.782144
Target:  5'- cGAGGcGCgaaaGCUGCCgcgcgcgugCAGGCGCaugGACg -3'
miRNA:   3'- -CUCCaCGag--UGAUGGa--------GUCCGCG---CUG- -5'
25202 3' -57.4 NC_005336.1 + 61770 0.67 0.782144
Target:  5'- --cGUGCUCG--ACCUCAGcGCGCG-Ca -3'
miRNA:   3'- cucCACGAGUgaUGGAGUC-CGCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 103503 0.67 0.782144
Target:  5'- cGAGGUGCgCAUcaACUUC-GGCGCGGg -3'
miRNA:   3'- -CUCCACGaGUGa-UGGAGuCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 77160 0.67 0.782144
Target:  5'- cGGGcGCUCGCagACC--GGGCGCGAg -3'
miRNA:   3'- cUCCaCGAGUGa-UGGagUCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 32395 0.67 0.772775
Target:  5'- cAGGUGCUCGu--CCgugcggCAGaGCGUGACg -3'
miRNA:   3'- cUCCACGAGUgauGGa-----GUC-CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.