miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25202 3' -57.4 NC_005336.1 + 48448 1.08 0.001988
Target:  5'- gGAGGUGCUCACUACCUCAGGCGCGACc -3'
miRNA:   3'- -CUCCACGAGUGAUGGAGUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 122208 0.83 0.109277
Target:  5'- -uGGUGCUCAuCUGCCUCagAGGCGUGGCc -3'
miRNA:   3'- cuCCACGAGU-GAUGGAG--UCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 76477 0.79 0.178869
Target:  5'- aAGGUGCacccgggCACgGCCUCGGGCGCGAa -3'
miRNA:   3'- cUCCACGa------GUGaUGGAGUCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 135926 0.73 0.417481
Target:  5'- cGGG-GC-CGCgGCCUCGGcGCGCGACg -3'
miRNA:   3'- cUCCaCGaGUGaUGGAGUC-CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 135926 0.73 0.417481
Target:  5'- cGGG-GC-CGCgGCCUCGGcGCGCGACg -3'
miRNA:   3'- cUCCaCGaGUGaUGGAGUC-CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 58425 0.72 0.444442
Target:  5'- -cGGUGCUCGCUgaACCUCAcGCGCu-- -3'
miRNA:   3'- cuCCACGAGUGA--UGGAGUcCGCGcug -5'
25202 3' -57.4 NC_005336.1 + 72381 0.72 0.453644
Target:  5'- cGAGGUGCUC--UACCaCGGGCGCcGCu -3'
miRNA:   3'- -CUCCACGAGugAUGGaGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 105028 0.72 0.491444
Target:  5'- gGAGGUGCUCgucugcgagaACUGCggcgacaUCGcGGCGCGGCu -3'
miRNA:   3'- -CUCCACGAG----------UGAUGg------AGU-CCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 130643 0.71 0.510883
Target:  5'- cGAGGUGCUCAaggccgGgCUCgAGGCGCaGAUg -3'
miRNA:   3'- -CUCCACGAGUga----UgGAG-UCCGCG-CUG- -5'
25202 3' -57.4 NC_005336.1 + 54592 0.7 0.560758
Target:  5'- gGAGGUGCUCGCgcgcgaguaCUgGGaGCGCGAg -3'
miRNA:   3'- -CUCCACGAGUGaug------GAgUC-CGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 96028 0.7 0.570908
Target:  5'- -cGGUGCUCACUAUCUUuucGuCGCGAUc -3'
miRNA:   3'- cuCCACGAGUGAUGGAGuc-C-GCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 55727 0.7 0.570908
Target:  5'- cGAGGUGCUgAacCUG-CUCGGGCGCuACg -3'
miRNA:   3'- -CUCCACGAgU--GAUgGAGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 98430 0.7 0.601593
Target:  5'- cGAGGUGCUgCACUGCuucgacgugCUCAccuuccucGGCgGCGGCg -3'
miRNA:   3'- -CUCCACGA-GUGAUG---------GAGU--------CCG-CGCUG- -5'
25202 3' -57.4 NC_005336.1 + 99047 0.7 0.611876
Target:  5'- cGAcGUGCUgCACgccAUCUCGGaGCGCGACu -3'
miRNA:   3'- -CUcCACGA-GUGa--UGGAGUC-CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 132834 0.7 0.611876
Target:  5'- gGAGGUGgUCGCgcucaUGCUggaggCGGGCGCaGACg -3'
miRNA:   3'- -CUCCACgAGUG-----AUGGa----GUCCGCG-CUG- -5'
25202 3' -57.4 NC_005336.1 + 135778 0.7 0.611876
Target:  5'- -cGGUGCUagugcgcgCGCUGCUggcggCAGGCGCG-Cg -3'
miRNA:   3'- cuCCACGA--------GUGAUGGa----GUCCGCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 129290 0.69 0.642789
Target:  5'- cGAGGUGCggcgGCUGCUggccgCAGGCGCc-- -3'
miRNA:   3'- -CUCCACGag--UGAUGGa----GUCCGCGcug -5'
25202 3' -57.4 NC_005336.1 + 97137 0.69 0.649999
Target:  5'- cGAGGUGCUCgcggcccgcgaccaGCUGCUggccgCGGGcCGCGcCg -3'
miRNA:   3'- -CUCCACGAG--------------UGAUGGa----GUCC-GCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 38472 0.69 0.653087
Target:  5'- -uGGUGCUCACgggcgGCa-CGGGCGUGGg -3'
miRNA:   3'- cuCCACGAGUGa----UGgaGUCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 80139 0.69 0.661314
Target:  5'- cGAGGUGUUCACgcuagagaagcgGCuCUCucuGGCGCG-Cg -3'
miRNA:   3'- -CUCCACGAGUGa-----------UG-GAGu--CCGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.