miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25202 3' -57.4 NC_005336.1 + 5987 0.66 0.809397
Target:  5'- cGGGUGCUCGa----UgGGGUGCGGCg -3'
miRNA:   3'- cUCCACGAGUgauggAgUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 6084 0.66 0.800464
Target:  5'- ----cGCUCGCUccGCCagCAGGCGCG-Cg -3'
miRNA:   3'- cuccaCGAGUGA--UGGa-GUCCGCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 12763 0.67 0.763278
Target:  5'- cAGGUGgUCGCg--CUCcuGCGCGACg -3'
miRNA:   3'- cUCCACgAGUGaugGAGucCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 15659 0.66 0.826764
Target:  5'- -cGGcUGCUCGCUgcgcgaucGCgUCAGcCGCGGCg -3'
miRNA:   3'- cuCC-ACGAGUGA--------UGgAGUCcGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 25062 0.68 0.694023
Target:  5'- cGGGGUGgUCAgUGgCUCcGGCGCcuGACg -3'
miRNA:   3'- -CUCCACgAGUgAUgGAGuCCGCG--CUG- -5'
25202 3' -57.4 NC_005336.1 + 29410 0.67 0.782144
Target:  5'- cGAGGcGCgaaaGCUGCCgcgcgcgugCAGGCGCaugGACg -3'
miRNA:   3'- -CUCCaCGag--UGAUGGa--------GUCCGCG---CUG- -5'
25202 3' -57.4 NC_005336.1 + 29592 0.67 0.753663
Target:  5'- uGGGUGC--GCUGCUgCGGGCGCuGCg -3'
miRNA:   3'- cUCCACGagUGAUGGaGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 30806 0.66 0.818166
Target:  5'- aGAGGUaGUgCGCgACCgcgCGGGCGCGcACc -3'
miRNA:   3'- -CUCCA-CGaGUGaUGGa--GUCCGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 32395 0.67 0.772775
Target:  5'- cAGGUGCUCGu--CCgugcggCAGaGCGUGACg -3'
miRNA:   3'- cUCCACGAGUgauGGa-----GUC-CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 38472 0.69 0.653087
Target:  5'- -uGGUGCUCACgggcgGCa-CGGGCGUGGg -3'
miRNA:   3'- cuCCACGAGUGa----UGgaGUCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 38824 0.66 0.791377
Target:  5'- cGAGGagcGCUCGCggucgaagAUCUCcgcGGUGCGGCg -3'
miRNA:   3'- -CUCCa--CGAGUGa-------UGGAGu--CCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 48448 1.08 0.001988
Target:  5'- gGAGGUGCUCACUACCUCAGGCGCGACc -3'
miRNA:   3'- -CUCCACGAGUGAUGGAGUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 50771 0.68 0.704148
Target:  5'- -cGGUGCUCACg--CUCcacuGCGCGGCg -3'
miRNA:   3'- cuCCACGAGUGaugGAGuc--CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 53030 0.66 0.791377
Target:  5'- -uGGUGC--ACUGCUgcgaAGGCGCGAUc -3'
miRNA:   3'- cuCCACGagUGAUGGag--UCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 54592 0.7 0.560758
Target:  5'- gGAGGUGCUCGCgcgcgaguaCUgGGaGCGCGAg -3'
miRNA:   3'- -CUCCACGAGUGaug------GAgUC-CGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 55236 0.66 0.791377
Target:  5'- aAGGUGUUCgugaACUACCUCAccagcaaGCGCGuGCg -3'
miRNA:   3'- cUCCACGAG----UGAUGGAGUc------CGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 55727 0.7 0.570908
Target:  5'- cGAGGUGCUgAacCUG-CUCGGGCGCuACg -3'
miRNA:   3'- -CUCCACGAgU--GAUgGAGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 58425 0.72 0.444442
Target:  5'- -cGGUGCUCGCUgaACCUCAcGCGCu-- -3'
miRNA:   3'- cuCCACGAGUGA--UGGAGUcCGCGcug -5'
25202 3' -57.4 NC_005336.1 + 61770 0.67 0.782144
Target:  5'- --cGUGCUCG--ACCUCAGcGCGCG-Ca -3'
miRNA:   3'- cucCACGAGUgaUGGAGUC-CGCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 64786 0.66 0.800464
Target:  5'- -cGGUGCgcaaggGCUuCCUCGaGCGCGGCg -3'
miRNA:   3'- cuCCACGag----UGAuGGAGUcCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.