miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25202 3' -57.4 NC_005336.1 + 124930 0.67 0.767091
Target:  5'- cGAGGUGCgcaucuacgcagagUGCUGCC--AGGCGgGGCa -3'
miRNA:   3'- -CUCCACGa-------------GUGAUGGagUCCGCgCUG- -5'
25202 3' -57.4 NC_005336.1 + 130885 0.68 0.724205
Target:  5'- cGAGGUGgUCAUgcuUCUCgcacaGGGCGCGGa -3'
miRNA:   3'- -CUCCACgAGUGau-GGAG-----UCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 99714 0.67 0.74394
Target:  5'- -uGGUGCUCuGCgacgaggcgGCCgccGGCGCGGCg -3'
miRNA:   3'- cuCCACGAG-UGa--------UGGaguCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 29592 0.67 0.753663
Target:  5'- uGGGUGC--GCUGCUgCGGGCGCuGCg -3'
miRNA:   3'- cUCCACGagUGAUGGaGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 69094 0.67 0.753663
Target:  5'- uGAGcGUGCUCuACUGCaUgGGGCGCacgGACu -3'
miRNA:   3'- -CUC-CACGAG-UGAUGgAgUCCGCG---CUG- -5'
25202 3' -57.4 NC_005336.1 + 131333 0.67 0.753663
Target:  5'- ----cGCgCGCUGCUUC-GGCGCGGCg -3'
miRNA:   3'- cuccaCGaGUGAUGGAGuCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 12763 0.67 0.763278
Target:  5'- cAGGUGgUCGCg--CUCcuGCGCGACg -3'
miRNA:   3'- cUCCACgAGUGaugGAGucCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 127102 0.67 0.763278
Target:  5'- -cGGUGCg-ACUGCUgcucgccgCGGGCGCgGACg -3'
miRNA:   3'- cuCCACGagUGAUGGa-------GUCCGCG-CUG- -5'
25202 3' -57.4 NC_005336.1 + 68421 0.67 0.763278
Target:  5'- ----cGCUCGCgcccCCgcugCGGGCGCGGCu -3'
miRNA:   3'- cuccaCGAGUGau--GGa---GUCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 104862 0.68 0.704148
Target:  5'- -cGGUGC--GCUGCCgCGGGCGCaaGACc -3'
miRNA:   3'- cuCCACGagUGAUGGaGUCCGCG--CUG- -5'
25202 3' -57.4 NC_005336.1 + 135900 0.68 0.673624
Target:  5'- -cGGcUGC-CGCUGCUgCuGGCGCGGCg -3'
miRNA:   3'- cuCC-ACGaGUGAUGGaGuCCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 99334 0.69 0.663368
Target:  5'- cGAaGUGCUCGCUgcgugcgccGCCUCcGGCGUGcGCg -3'
miRNA:   3'- -CUcCACGAGUGA---------UGGAGuCCGCGC-UG- -5'
25202 3' -57.4 NC_005336.1 + 76477 0.79 0.178869
Target:  5'- aAGGUGCacccgggCACgGCCUCGGGCGCGAa -3'
miRNA:   3'- cUCCACGa------GUGaUGGAGUCCGCGCUg -5'
25202 3' -57.4 NC_005336.1 + 135926 0.73 0.417481
Target:  5'- cGGG-GC-CGCgGCCUCGGcGCGCGACg -3'
miRNA:   3'- cUCCaCGaGUGaUGGAGUC-CGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 72381 0.72 0.453644
Target:  5'- cGAGGUGCUC--UACCaCGGGCGCcGCu -3'
miRNA:   3'- -CUCCACGAGugAUGGaGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 105028 0.72 0.491444
Target:  5'- gGAGGUGCUCgucugcgagaACUGCggcgacaUCGcGGCGCGGCu -3'
miRNA:   3'- -CUCCACGAG----------UGAUGg------AGU-CCGCGCUG- -5'
25202 3' -57.4 NC_005336.1 + 55727 0.7 0.570908
Target:  5'- cGAGGUGCUgAacCUG-CUCGGGCGCuACg -3'
miRNA:   3'- -CUCCACGAgU--GAUgGAGUCCGCGcUG- -5'
25202 3' -57.4 NC_005336.1 + 129290 0.69 0.642789
Target:  5'- cGAGGUGCggcgGCUGCUggccgCAGGCGCc-- -3'
miRNA:   3'- -CUCCACGag--UGAUGGa----GUCCGCGcug -5'
25202 3' -57.4 NC_005336.1 + 97137 0.69 0.649999
Target:  5'- cGAGGUGCUCgcggcccgcgaccaGCUGCUggccgCGGGcCGCGcCg -3'
miRNA:   3'- -CUCCACGAG--------------UGAUGGa----GUCC-GCGCuG- -5'
25202 3' -57.4 NC_005336.1 + 38472 0.69 0.653087
Target:  5'- -uGGUGCUCACgggcgGCa-CGGGCGUGGg -3'
miRNA:   3'- cuCCACGAGUGa----UGgaGUCCGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.