miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25202 5' -59.2 NC_005336.1 + 30491 0.66 0.745376
Target:  5'- gUGGcCCUCGCggCGGCGgccGCGauGUUCGUGa -3'
miRNA:   3'- -ACC-GGAGCGg-GCCGUa--CGU--CAAGCAU- -5'
25202 5' -59.2 NC_005336.1 + 42509 0.66 0.745376
Target:  5'- cGGCCgcgCGCCacugCGGCAcuagcaUGCGGUUgGg- -3'
miRNA:   3'- aCCGGa--GCGG----GCCGU------ACGUCAAgCau -5'
25202 5' -59.2 NC_005336.1 + 126111 0.66 0.745376
Target:  5'- aUGGCCUCGCCCGcGCucaacgaccugGUGCGc--CGg- -3'
miRNA:   3'- -ACCGGAGCGGGC-CG-----------UACGUcaaGCau -5'
25202 5' -59.2 NC_005336.1 + 126674 0.66 0.745376
Target:  5'- aGGaCCUcggCGCCUGGC-UGCAGgcCGUc -3'
miRNA:   3'- aCC-GGA---GCGGGCCGuACGUCaaGCAu -5'
25202 5' -59.2 NC_005336.1 + 42109 0.66 0.725836
Target:  5'- aGGCUgCGCUCGaGCGUGCGGaucuugggCGUGg -3'
miRNA:   3'- aCCGGaGCGGGC-CGUACGUCaa------GCAU- -5'
25202 5' -59.2 NC_005336.1 + 65557 0.66 0.725836
Target:  5'- cGGcCCUCGCCCacGC-UGgAGUUCGa- -3'
miRNA:   3'- aCC-GGAGCGGGc-CGuACgUCAAGCau -5'
25202 5' -59.2 NC_005336.1 + 68049 0.66 0.71594
Target:  5'- cGGCCgCGCCCG-CGggGCAGcgCGUu -3'
miRNA:   3'- aCCGGaGCGGGCcGUa-CGUCaaGCAu -5'
25202 5' -59.2 NC_005336.1 + 15007 0.66 0.705973
Target:  5'- cGGgCUCGCgCGGCGcGCGGgcggCGUc -3'
miRNA:   3'- aCCgGAGCGgGCCGUaCGUCaa--GCAu -5'
25202 5' -59.2 NC_005336.1 + 39420 0.66 0.705973
Target:  5'- gGGCCgcguggCGCCCGGCAccuacgUGCGcuucUUCGa- -3'
miRNA:   3'- aCCGGa-----GCGGGCCGU------ACGUc---AAGCau -5'
25202 5' -59.2 NC_005336.1 + 10142 0.67 0.685861
Target:  5'- cGGCgCUCGCggCGGUGUGCAcgUCGUGc -3'
miRNA:   3'- aCCG-GAGCGg-GCCGUACGUcaAGCAU- -5'
25202 5' -59.2 NC_005336.1 + 69233 0.67 0.665572
Target:  5'- gUGGCCagGUCCaGCAcGCcGUUCGUGa -3'
miRNA:   3'- -ACCGGagCGGGcCGUaCGuCAAGCAU- -5'
25202 5' -59.2 NC_005336.1 + 124127 0.67 0.645175
Target:  5'- cGGacgccaCUCGCgCGuGCGUGCGGUaCGUGg -3'
miRNA:   3'- aCCg-----GAGCGgGC-CGUACGUCAaGCAU- -5'
25202 5' -59.2 NC_005336.1 + 28251 0.67 0.645175
Target:  5'- cGGCC--GCgCGGCGUGCGGUggcgCGg- -3'
miRNA:   3'- aCCGGagCGgGCCGUACGUCAa---GCau -5'
25202 5' -59.2 NC_005336.1 + 94939 0.67 0.634956
Target:  5'- cGGCCUcCGCCgGGaCcgGCAGgggCGg- -3'
miRNA:   3'- aCCGGA-GCGGgCC-GuaCGUCaa-GCau -5'
25202 5' -59.2 NC_005336.1 + 67626 0.68 0.60432
Target:  5'- gGGCCgccgUCGUCCGGCG-GCGGcUCGc- -3'
miRNA:   3'- aCCGG----AGCGGGCCGUaCGUCaAGCau -5'
25202 5' -59.2 NC_005336.1 + 125471 0.69 0.55376
Target:  5'- cUGGCCUCGCUgcgaugggugcgCGuGCGUGCGGUcCGc- -3'
miRNA:   3'- -ACCGGAGCGG------------GC-CGUACGUCAaGCau -5'
25202 5' -59.2 NC_005336.1 + 42366 0.69 0.55376
Target:  5'- cGGCCUCcauGCgCGGCGUGgCGGUggUCGa- -3'
miRNA:   3'- aCCGGAG---CGgGCCGUAC-GUCA--AGCau -5'
25202 5' -59.2 NC_005336.1 + 62804 0.69 0.543784
Target:  5'- cGGUCUCGCacCCGGuCAUGCgccggcgcuGGUUCGg- -3'
miRNA:   3'- aCCGGAGCG--GGCC-GUACG---------UCAAGCau -5'
25202 5' -59.2 NC_005336.1 + 94087 0.71 0.448116
Target:  5'- gGuGCCUCGCCCGuGCAcGCGGccUCGg- -3'
miRNA:   3'- aC-CGGAGCGGGC-CGUaCGUCa-AGCau -5'
25202 5' -59.2 NC_005336.1 + 8699 0.71 0.421248
Target:  5'- cGGCCUcCGCagCGGCAUGCAGccggCGg- -3'
miRNA:   3'- aCCGGA-GCGg-GCCGUACGUCaa--GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.