miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
25202	5'	-59.2	NC_005336.1	+	61181	0.71	0.41251
	Target:  5'- cGGCaagaCGCCCGGCGugcgcacgcUGCAGUUCa-- -3' miRNA:   3'- aCCGga--GCGGGCCGU---------ACGUCAAGcau -5'
25202	5'	-59.2	NC_005336.1	+	64143	0.72	0.354602
	Target:  5'- cUGGCCUCGCCgGGCAagUGUcuGGUcuUCGa- -3' miRNA:   3'- -ACCGGAGCGGgCCGU--ACG--UCA--AGCau -5'
25202	5'	-59.2	NC_005336.1	+	88435	0.73	0.316887
	Target:  5'- cGGCCUCgGCgCCGGCGgagggcacggGCAcGUUCGUGa -3' miRNA:   3'- aCCGGAG-CG-GGCCGUa---------CGU-CAAGCAU- -5'
25202	5'	-59.2	NC_005336.1	+	36287	0.73	0.316887
	Target:  5'- cGGCCgcgugcgCGCCCGGCGgcggcGCGGUUCc-- -3' miRNA:   3'- aCCGGa------GCGGGCCGUa----CGUCAAGcau -5'
25202	5'	-59.2	NC_005336.1	+	7892	0.74	0.282274
	Target:  5'- aGGCCUCgcuggGCCCGGCGUcCAGcgCGUGc -3' miRNA:   3'- aCCGGAG-----CGGGCCGUAcGUCaaGCAU- -5'
25202	5'	-59.2	NC_005336.1	+	11802	0.74	0.269291
	Target:  5'- gUGGCCgCGCUCGGCGUGCGcgcGUUCa-- -3' miRNA:   3'- -ACCGGaGCGGGCCGUACGU---CAAGcau -5'
25202	5'	-59.2	NC_005336.1	+	48482	1.07	0.001598
	Target:  5'- gUGGCCUCGCCCGGCAUGCAGUUCGUAg -3' miRNA:   3'- -ACCGGAGCGGGCCGUACGUCAAGCAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home