miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25205 5' -50.7 NC_005336.1 + 68107 0.66 0.990606
Target:  5'- -----cGGCGGCCCgAucACG-GCGCGg -3'
miRNA:   3'- uauuuaCUGCCGGGgUu-UGCaCGUGU- -5'
25205 5' -50.7 NC_005336.1 + 52484 0.66 0.990606
Target:  5'- -----cGugGGCuccgcgCCCGGACG-GCACAu -3'
miRNA:   3'- uauuuaCugCCG------GGGUUUGCaCGUGU- -5'
25205 5' -50.7 NC_005336.1 + 59729 0.66 0.990606
Target:  5'- -----cGACGGCC--GAACGgUGCGCAu -3'
miRNA:   3'- uauuuaCUGCCGGggUUUGC-ACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 71983 0.66 0.990606
Target:  5'- -----cGGCGcGCCCgCGcGCGUGCAUc -3'
miRNA:   3'- uauuuaCUGC-CGGG-GUuUGCACGUGu -5'
25205 5' -50.7 NC_005336.1 + 44521 0.66 0.990606
Target:  5'- -----aGAccCGGaCCCC-GGCGUGCGCGa -3'
miRNA:   3'- uauuuaCU--GCC-GGGGuUUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 68762 0.66 0.990606
Target:  5'- -----cGACGaGCCCCGAGCccgaGCGCu -3'
miRNA:   3'- uauuuaCUGC-CGGGGUUUGca--CGUGu -5'
25205 5' -50.7 NC_005336.1 + 115001 0.66 0.989243
Target:  5'- -----gGAgGGCCCCuGGCG-GCGCc -3'
miRNA:   3'- uauuuaCUgCCGGGGuUUGCaCGUGu -5'
25205 5' -50.7 NC_005336.1 + 15034 0.66 0.989243
Target:  5'- -----cGGCGcgcGCCCCGGGCGccGCGCGa -3'
miRNA:   3'- uauuuaCUGC---CGGGGUUUGCa-CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 76477 0.66 0.989243
Target:  5'- -aAGGUGcacccgggcACGGCCUCGGGCGcgaaGCGCAu -3'
miRNA:   3'- uaUUUAC---------UGCCGGGGUUUGCa---CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 95798 0.66 0.989243
Target:  5'- -gGAcgGGCaccgGGCCCCGGAuuUGUGCAgCAg -3'
miRNA:   3'- uaUUuaCUG----CCGGGGUUU--GCACGU-GU- -5'
25205 5' -50.7 NC_005336.1 + 13093 0.66 0.989243
Target:  5'- -----aGGCGGCgCCGcgugcCGUGCACGc -3'
miRNA:   3'- uauuuaCUGCCGgGGUuu---GCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 66426 0.66 0.989243
Target:  5'- -----gGACGGCCUCGAcgGCGgccacgaGCGCGg -3'
miRNA:   3'- uauuuaCUGCCGGGGUU--UGCa------CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 96996 0.66 0.988355
Target:  5'- -----cGugGGCCUCuucgcggaccugcGCGUGCGCAc -3'
miRNA:   3'- uauuuaCugCCGGGGuu-----------UGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 114645 0.66 0.987732
Target:  5'- gGUGAGUGACGGCggCGgcAGCGaGCGCGu -3'
miRNA:   3'- -UAUUUACUGCCGggGU--UUGCaCGUGU- -5'
25205 5' -50.7 NC_005336.1 + 130211 0.66 0.987732
Target:  5'- ---cAUGGCGGCCUUccGCGggcUGCGCGa -3'
miRNA:   3'- uauuUACUGCCGGGGuuUGC---ACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 55969 0.66 0.987732
Target:  5'- cGUGGAc-AUGGCCUCcuACGUGUACAa -3'
miRNA:   3'- -UAUUUacUGCCGGGGuuUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 54611 0.66 0.984221
Target:  5'- -cGGcgGACguGGCCgCGcucAGCGUGCACGa -3'
miRNA:   3'- uaUUuaCUG--CCGGgGU---UUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 123714 0.66 0.984221
Target:  5'- cUGGA--GCGGCgaCCCGggaGGCGUGCGCAc -3'
miRNA:   3'- uAUUUacUGCCG--GGGU---UUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 103223 0.67 0.982203
Target:  5'- -----aGAuCGGCgCC-GGCGUGCGCAa -3'
miRNA:   3'- uauuuaCU-GCCGgGGuUUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 55875 0.67 0.982203
Target:  5'- -----cGGCGcGCCCCGcacGGCGUGCcCGc -3'
miRNA:   3'- uauuuaCUGC-CGGGGU---UUGCACGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.