miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25205 5' -50.7 NC_005336.1 + 52484 0.66 0.990606
Target:  5'- -----cGugGGCuccgcgCCCGGACG-GCACAu -3'
miRNA:   3'- uauuuaCugCCG------GGGUUUGCaCGUGU- -5'
25205 5' -50.7 NC_005336.1 + 105512 0.68 0.965828
Target:  5'- aGUAGcUGcGCGcGCCCCAGucgccgcgcGCGUGCGCc -3'
miRNA:   3'- -UAUUuAC-UGC-CGGGGUU---------UGCACGUGu -5'
25205 5' -50.7 NC_005336.1 + 59166 0.67 0.979996
Target:  5'- -----cGACGG-CUgGAugGUGCACAa -3'
miRNA:   3'- uauuuaCUGCCgGGgUUugCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 54611 0.66 0.984221
Target:  5'- -cGGcgGACguGGCCgCGcucAGCGUGCACGa -3'
miRNA:   3'- uaUUuaCUG--CCGGgGU---UUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 55969 0.66 0.987732
Target:  5'- cGUGGAc-AUGGCCUCcuACGUGUACAa -3'
miRNA:   3'- -UAUUUacUGCCGGGGuuUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 96996 0.66 0.988355
Target:  5'- -----cGugGGCCUCuucgcggaccugcGCGUGCGCAc -3'
miRNA:   3'- uauuuaCugCCGGGGuu-----------UGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 15034 0.66 0.989243
Target:  5'- -----cGGCGcgcGCCCCGGGCGccGCGCGa -3'
miRNA:   3'- uauuuaCUGC---CGGGGUUUGCa-CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 76477 0.66 0.989243
Target:  5'- -aAGGUGcacccgggcACGGCCUCGGGCGcgaaGCGCAu -3'
miRNA:   3'- uaUUUAC---------UGCCGGGGUUUGCa---CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 95798 0.66 0.989243
Target:  5'- -gGAcgGGCaccgGGCCCCGGAuuUGUGCAgCAg -3'
miRNA:   3'- uaUUuaCUG----CCGGGGUUU--GCACGU-GU- -5'
25205 5' -50.7 NC_005336.1 + 135469 0.68 0.96445
Target:  5'- ----cUGACGGCUgCAAACGgaaacaaacgcagGCGCAg -3'
miRNA:   3'- uauuuACUGCCGGgGUUUGCa------------CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 86382 0.69 0.945751
Target:  5'- -gAAGUGGCGGCUCacGGCGUuggGCACGg -3'
miRNA:   3'- uaUUUACUGCCGGGguUUGCA---CGUGU- -5'
25205 5' -50.7 NC_005336.1 + 42394 0.69 0.935914
Target:  5'- -----cGACGGCUgCu-GCGUGCGCGu -3'
miRNA:   3'- uauuuaCUGCCGGgGuuUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 90697 0.75 0.678871
Target:  5'- -----cGGCGGCUgCCGAGCGUGUACGc -3'
miRNA:   3'- uauuuaCUGCCGG-GGUUUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 65777 0.75 0.678871
Target:  5'- -aGAcgGACGGCgucuCCgCGAGCGUGCGCGu -3'
miRNA:   3'- uaUUuaCUGCCG----GG-GUUUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 123075 0.72 0.814617
Target:  5'- -----cGGCGGCCgCAgacgugaccgucgagGACGUGCGCAg -3'
miRNA:   3'- uauuuaCUGCCGGgGU---------------UUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 51417 0.72 0.837878
Target:  5'- -cGGAUGGCGGCgCCGacgacgcccGugGUGCACc -3'
miRNA:   3'- uaUUUACUGCCGgGGU---------UugCACGUGu -5'
25205 5' -50.7 NC_005336.1 + 57337 0.71 0.870853
Target:  5'- -----gGACGGCCCUc--CGUGCACc -3'
miRNA:   3'- uauuuaCUGCCGGGGuuuGCACGUGu -5'
25205 5' -50.7 NC_005336.1 + 49553 0.71 0.870853
Target:  5'- -----cGGCGGCCCCGAgacugaGCGccgcUGCACGc -3'
miRNA:   3'- uauuuaCUGCCGGGGUU------UGC----ACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 109423 0.7 0.913038
Target:  5'- -----aGGCcGCCUUGAGCGUGCGCAg -3'
miRNA:   3'- uauuuaCUGcCGGGGUUUGCACGUGU- -5'
25205 5' -50.7 NC_005336.1 + 482 0.7 0.925011
Target:  5'- -----cGACGGCCCCGcuaaAGCGUuUACAa -3'
miRNA:   3'- uauuuaCUGCCGGGGU----UUGCAcGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.