miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25206 5' -63 NC_005336.1 + 122574 0.66 0.53453
Target:  5'- ---cGCUCGaCUCGUaCGCGGUGCUg- -3'
miRNA:   3'- aaguCGAGC-GAGCGcGCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 65220 0.66 0.53453
Target:  5'- --gGGCaaGCUgCGCGCGCGcGUGCCc- -3'
miRNA:   3'- aagUCGagCGA-GCGCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 99649 0.66 0.53453
Target:  5'- -gCAcCUCGCggaCGCGCGCGcGCGCg-- -3'
miRNA:   3'- aaGUcGAGCGa--GCGCGCGC-CGCGgaa -5'
25206 5' -63 NC_005336.1 + 81385 0.66 0.53453
Target:  5'- gUUCAGCgaGCacCGCGUGCaGCGCCg- -3'
miRNA:   3'- -AAGUCGagCGa-GCGCGCGcCGCGGaa -5'
25206 5' -63 NC_005336.1 + 44233 0.66 0.53453
Target:  5'- cUUCGGCga-CUcCGCGCuGCGGCGCUa- -3'
miRNA:   3'- -AAGUCGagcGA-GCGCG-CGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 72150 0.66 0.53453
Target:  5'- ---cGCUgGUgUUGCGCGCGGCGCg-- -3'
miRNA:   3'- aaguCGAgCG-AGCGCGCGCCGCGgaa -5'
25206 5' -63 NC_005336.1 + 40826 0.66 0.53453
Target:  5'- --gAGCgcguuguagCGCUCGaCG-GCGGCGCCg- -3'
miRNA:   3'- aagUCGa--------GCGAGC-GCgCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 44188 0.66 0.53453
Target:  5'- cUUCuGCUCGgaguucgUGCGCGUGGCGCg-- -3'
miRNA:   3'- -AAGuCGAGCga-----GCGCGCGCCGCGgaa -5'
25206 5' -63 NC_005336.1 + 30439 0.66 0.53453
Target:  5'- -gCGGC-CGC-CGCGuCGCGG-GCCUUu -3'
miRNA:   3'- aaGUCGaGCGaGCGC-GCGCCgCGGAA- -5'
25206 5' -63 NC_005336.1 + 40131 0.66 0.533555
Target:  5'- -aCGGCUacgaagaCGCccUCGCGCGCGcGCGCg-- -3'
miRNA:   3'- aaGUCGA-------GCG--AGCGCGCGC-CGCGgaa -5'
25206 5' -63 NC_005336.1 + 104370 0.66 0.524816
Target:  5'- gUCAagguGCgcgCGCUgacCGUGCGCGaGCGCCg- -3'
miRNA:   3'- aAGU----CGa--GCGA---GCGCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 75085 0.66 0.524816
Target:  5'- --gAGC-CGCgccgCGCGCGCGG-GCCc- -3'
miRNA:   3'- aagUCGaGCGa---GCGCGCGCCgCGGaa -5'
25206 5' -63 NC_005336.1 + 91876 0.66 0.524816
Target:  5'- -gUAGC-CGCcgcagaUGCGCGCGuGCGCCUc -3'
miRNA:   3'- aaGUCGaGCGa-----GCGCGCGC-CGCGGAa -5'
25206 5' -63 NC_005336.1 + 127557 0.66 0.524816
Target:  5'- -gCAGaCcCGCUCGCGCGCgacaucauccGGCGCa-- -3'
miRNA:   3'- aaGUC-GaGCGAGCGCGCG----------CCGCGgaa -5'
25206 5' -63 NC_005336.1 + 95838 0.66 0.524816
Target:  5'- --uGGCggCGUcCGUGgGCGGCGCCg- -3'
miRNA:   3'- aagUCGa-GCGaGCGCgCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 95978 0.66 0.524816
Target:  5'- --gGGcCUCGCacgagcCGCGCGCGGCucGCCa- -3'
miRNA:   3'- aagUC-GAGCGa-----GCGCGCGCCG--CGGaa -5'
25206 5' -63 NC_005336.1 + 92194 0.66 0.524816
Target:  5'- gUgGGgUCGCaggugUGCaGCGCGGCGCCc- -3'
miRNA:   3'- aAgUCgAGCGa----GCG-CGCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 62065 0.66 0.523849
Target:  5'- -cCAGCgagcCGCg-GCGCGCGGCcaucgccGCCUUc -3'
miRNA:   3'- aaGUCGa---GCGagCGCGCGCCG-------CGGAA- -5'
25206 5' -63 NC_005336.1 + 89199 0.66 0.521916
Target:  5'- -gCGGCUgCGCUCGCugcucacgaccaugGCGCGcGCGCg-- -3'
miRNA:   3'- aaGUCGA-GCGAGCG--------------CGCGC-CGCGgaa -5'
25206 5' -63 NC_005336.1 + 54190 0.66 0.515171
Target:  5'- gUCGGCggCGC-CGCGCGaCGGCGg--- -3'
miRNA:   3'- aAGUCGa-GCGaGCGCGC-GCCGCggaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.