miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25206 5' -63 NC_005336.1 + 54190 0.66 0.515171
Target:  5'- gUCGGCggCGC-CGCGCGaCGGCGg--- -3'
miRNA:   3'- aAGUCGa-GCGaGCGCGC-GCCGCggaa -5'
25206 5' -63 NC_005336.1 + 26338 0.66 0.505599
Target:  5'- -cCAGCgugacgcggUCGC-CGgGCGCGcGCGCCg- -3'
miRNA:   3'- aaGUCG---------AGCGaGCgCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 131512 0.66 0.505599
Target:  5'- -aCAGUccacgCGCcCGCGCGCGaGCGUCa- -3'
miRNA:   3'- aaGUCGa----GCGaGCGCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 100872 0.66 0.515171
Target:  5'- -gCGGCcuUCGCggcgCGCGCGCGGuCGgCg- -3'
miRNA:   3'- aaGUCG--AGCGa---GCGCGCGCC-GCgGaa -5'
25206 5' -63 NC_005336.1 + 49343 0.66 0.474579
Target:  5'- -aCAGaccaUCGCcCGCGCGCgcgugaccagcuccGGCGCCg- -3'
miRNA:   3'- aaGUCg---AGCGaGCGCGCG--------------CCGCGGaa -5'
25206 5' -63 NC_005336.1 + 95978 0.66 0.524816
Target:  5'- --gGGcCUCGCacgagcCGCGCGCGGCucGCCa- -3'
miRNA:   3'- aagUC-GAGCGa-----GCGCGCGCCG--CGGaa -5'
25206 5' -63 NC_005336.1 + 134159 0.66 0.486689
Target:  5'- --aGGCUCGCcgUCGCGCGCgagcugGGCGUg-- -3'
miRNA:   3'- aagUCGAGCG--AGCGCGCG------CCGCGgaa -5'
25206 5' -63 NC_005336.1 + 12769 0.66 0.486689
Target:  5'- gUCGcGCUccugcgcgaCGuCUCGCGCGUGGuCGCCg- -3'
miRNA:   3'- aAGU-CGA---------GC-GAGCGCGCGCC-GCGGaa -5'
25206 5' -63 NC_005336.1 + 3943 0.66 0.486689
Target:  5'- -gCGGCgcagCGC-CGCGCGCagcaGCGCCg- -3'
miRNA:   3'- aaGUCGa---GCGaGCGCGCGc---CGCGGaa -5'
25206 5' -63 NC_005336.1 + 51116 0.66 0.512291
Target:  5'- gUCGGCuccUCGCUCGCGCuggucacucgguacGCGG-GUCUg -3'
miRNA:   3'- aAGUCG---AGCGAGCGCG--------------CGCCgCGGAa -5'
25206 5' -63 NC_005336.1 + 14875 0.66 0.505599
Target:  5'- -aCAGCgagaGCacgUCGuCGCGCGcGCGCCUc -3'
miRNA:   3'- aaGUCGag--CG---AGC-GCGCGC-CGCGGAa -5'
25206 5' -63 NC_005336.1 + 82074 0.66 0.496103
Target:  5'- ---cGCUCGC-CGCGCacacgGCGGaCGCCa- -3'
miRNA:   3'- aaguCGAGCGaGCGCG-----CGCC-GCGGaa -5'
25206 5' -63 NC_005336.1 + 91876 0.66 0.524816
Target:  5'- -gUAGC-CGCcgcagaUGCGCGCGuGCGCCUc -3'
miRNA:   3'- aaGUCGaGCGa-----GCGCGCGC-CGCGGAa -5'
25206 5' -63 NC_005336.1 + 95838 0.66 0.524816
Target:  5'- --uGGCggCGUcCGUGgGCGGCGCCg- -3'
miRNA:   3'- aagUCGa-GCGaGCGCgCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 75085 0.66 0.524816
Target:  5'- --gAGC-CGCgccgCGCGCGCGG-GCCc- -3'
miRNA:   3'- aagUCGaGCGa---GCGCGCGCCgCGGaa -5'
25206 5' -63 NC_005336.1 + 89199 0.66 0.521916
Target:  5'- -gCGGCUgCGCUCGCugcucacgaccaugGCGCGcGCGCg-- -3'
miRNA:   3'- aaGUCGA-GCGAGCG--------------CGCGC-CGCGgaa -5'
25206 5' -63 NC_005336.1 + 104370 0.66 0.524816
Target:  5'- gUCAagguGCgcgCGCUgacCGUGCGCGaGCGCCg- -3'
miRNA:   3'- aAGU----CGa--GCGA---GCGCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 127557 0.66 0.524816
Target:  5'- -gCAGaCcCGCUCGCGCGCgacaucauccGGCGCa-- -3'
miRNA:   3'- aaGUC-GaGCGAGCGCGCG----------CCGCGgaa -5'
25206 5' -63 NC_005336.1 + 1017 0.66 0.512291
Target:  5'- gUCGGC-CGCuccgcuccccgcggUCGCGgGCGGCgGCCc- -3'
miRNA:   3'- aAGUCGaGCG--------------AGCGCgCGCCG-CGGaa -5'
25206 5' -63 NC_005336.1 + 99339 0.66 0.505599
Target:  5'- ---uGCUCGCU-GCGUGCGcCGCCUc -3'
miRNA:   3'- aaguCGAGCGAgCGCGCGCcGCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.