miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25206 5' -63 NC_005336.1 + 81845 0.66 0.515171
Target:  5'- -gCAGCgccgCGUUCagcaGCGCGCGGCcgucGCCg- -3'
miRNA:   3'- aaGUCGa---GCGAG----CGCGCGCCG----CGGaa -5'
25206 5' -63 NC_005336.1 + 80160 0.66 0.515171
Target:  5'- -gCGGCUCuCUcuggCGCGCGUGGUGCUc- -3'
miRNA:   3'- aaGUCGAGcGA----GCGCGCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 54190 0.66 0.515171
Target:  5'- gUCGGCggCGC-CGCGCGaCGGCGg--- -3'
miRNA:   3'- aAGUCGa-GCGaGCGCGC-GCCGCggaa -5'
25206 5' -63 NC_005336.1 + 100872 0.66 0.515171
Target:  5'- -gCGGCcuUCGCggcgCGCGCGCGGuCGgCg- -3'
miRNA:   3'- aaGUCG--AGCGa---GCGCGCGCC-GCgGaa -5'
25206 5' -63 NC_005336.1 + 24095 0.66 0.51421
Target:  5'- -aCGGCgggucgaUCGC-CaGCGCGCGGCGCa-- -3'
miRNA:   3'- aaGUCG-------AGCGaG-CGCGCGCCGCGgaa -5'
25206 5' -63 NC_005336.1 + 1017 0.66 0.512291
Target:  5'- gUCGGC-CGCuccgcuccccgcggUCGCGgGCGGCgGCCc- -3'
miRNA:   3'- aAGUCGaGCG--------------AGCGCgCGCCG-CGGaa -5'
25206 5' -63 NC_005336.1 + 51116 0.66 0.512291
Target:  5'- gUCGGCuccUCGCUCGCGCuggucacucgguacGCGG-GUCUg -3'
miRNA:   3'- aAGUCG---AGCGAGCGCG--------------CGCCgCGGAa -5'
25206 5' -63 NC_005336.1 + 1017 0.66 0.512291
Target:  5'- gUCGGC-CGCuccgcuccccgcggUCGCGgGCGGCgGCCc- -3'
miRNA:   3'- aAGUCGaGCG--------------AGCGCgCGCCG-CGGaa -5'
25206 5' -63 NC_005336.1 + 26338 0.66 0.505599
Target:  5'- -cCAGCgugacgcggUCGC-CGgGCGCGcGCGCCg- -3'
miRNA:   3'- aaGUCG---------AGCGaGCgCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 131512 0.66 0.505599
Target:  5'- -aCAGUccacgCGCcCGCGCGCGaGCGUCa- -3'
miRNA:   3'- aaGUCGa----GCGaGCGCGCGC-CGCGGaa -5'
25206 5' -63 NC_005336.1 + 89293 0.66 0.505599
Target:  5'- --aGGCcuucCGCcgCGgGCGCGGCGCCc- -3'
miRNA:   3'- aagUCGa---GCGa-GCgCGCGCCGCGGaa -5'
25206 5' -63 NC_005336.1 + 75054 0.66 0.505599
Target:  5'- -aCAGa--GCUCGCGCGUGuGCGCa-- -3'
miRNA:   3'- aaGUCgagCGAGCGCGCGC-CGCGgaa -5'
25206 5' -63 NC_005336.1 + 14875 0.66 0.505599
Target:  5'- -aCAGCgagaGCacgUCGuCGCGCGcGCGCCUc -3'
miRNA:   3'- aaGUCGag--CG---AGC-GCGCGC-CGCGGAa -5'
25206 5' -63 NC_005336.1 + 99339 0.66 0.505599
Target:  5'- ---uGCUCGCU-GCGUGCGcCGCCUc -3'
miRNA:   3'- aaguCGAGCGAgCGCGCGCcGCGGAa -5'
25206 5' -63 NC_005336.1 + 87153 0.66 0.496103
Target:  5'- -gCAGCUCGC-CGCGCagcucGCGGagguagGCCUc -3'
miRNA:   3'- aaGUCGAGCGaGCGCG-----CGCCg-----CGGAa -5'
25206 5' -63 NC_005336.1 + 36375 0.66 0.496103
Target:  5'- --gAGC-CGCUUGCGC-CGGCGCa-- -3'
miRNA:   3'- aagUCGaGCGAGCGCGcGCCGCGgaa -5'
25206 5' -63 NC_005336.1 + 116683 0.66 0.496103
Target:  5'- cUUgGGCUCGUaCGCGgGgcaGGCGCCg- -3'
miRNA:   3'- -AAgUCGAGCGaGCGCgCg--CCGCGGaa -5'
25206 5' -63 NC_005336.1 + 82074 0.66 0.496103
Target:  5'- ---cGCUCGC-CGCGCacacgGCGGaCGCCa- -3'
miRNA:   3'- aaguCGAGCGaGCGCG-----CGCC-GCGGaa -5'
25206 5' -63 NC_005336.1 + 3943 0.66 0.486689
Target:  5'- -gCGGCgcagCGC-CGCGCGCagcaGCGCCg- -3'
miRNA:   3'- aaGUCGa---GCGaGCGCGCGc---CGCGGaa -5'
25206 5' -63 NC_005336.1 + 12769 0.66 0.486689
Target:  5'- gUCGcGCUccugcgcgaCGuCUCGCGCGUGGuCGCCg- -3'
miRNA:   3'- aAGU-CGA---------GC-GAGCGCGCGCC-GCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.