miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 79526 0.66 0.875756
Target:  5'- cUGguGggCCUCGCCGAcg-ACCCGcCc -3'
miRNA:   3'- aGCguCa-GGAGCGGCUagaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 123811 0.66 0.875756
Target:  5'- cUGCAcagCCUCGCCaccuUCUGCUCGUg -3'
miRNA:   3'- aGCGUca-GGAGCGGcu--AGAUGGGCAg -5'
25207 3' -57.1 NC_005336.1 + 44772 0.66 0.875756
Target:  5'- cCGC-GUCCaUGaCCGAcugUCUgaACCCGUCg -3'
miRNA:   3'- aGCGuCAGGaGC-GGCU---AGA--UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 39227 0.66 0.868485
Target:  5'- cCGCGGUgCUCGaggaGGUCUACgCCG-Cg -3'
miRNA:   3'- aGCGUCAgGAGCgg--CUAGAUG-GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 56580 0.66 0.868485
Target:  5'- cCGCGGcag-CGCCGcgC-GCCCGUCg -3'
miRNA:   3'- aGCGUCaggaGCGGCuaGaUGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 55818 0.66 0.868485
Target:  5'- cCGCGuGUCCgccugcaacugCGCCGAcaUGCCCGcCa -3'
miRNA:   3'- aGCGU-CAGGa----------GCGGCUagAUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 47853 0.66 0.861005
Target:  5'- aCGCAGUCCUucaaggacgUGCCGccCUucACCCG-Ca -3'
miRNA:   3'- aGCGUCAGGA---------GCGGCuaGA--UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 36219 0.66 0.861005
Target:  5'- cCGCAGcgCC-CGCaCGGUCUGCuuGa- -3'
miRNA:   3'- aGCGUCa-GGaGCG-GCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 60438 0.66 0.861005
Target:  5'- aUC-CAGUCCUUGaCCGAgcccacgaUGCCCGcCa -3'
miRNA:   3'- -AGcGUCAGGAGC-GGCUag------AUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 75587 0.66 0.845439
Target:  5'- aCGCGGcgcUCgCUCaGCCGGUCgaacagcaGCCUGUCu -3'
miRNA:   3'- aGCGUC---AG-GAG-CGGCUAGa-------UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 24208 0.66 0.837366
Target:  5'- cCGCAggacGUCCUCaGCaCGGUgUgccagcGCCCGUCu -3'
miRNA:   3'- aGCGU----CAGGAG-CG-GCUAgA------UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 55734 0.66 0.837366
Target:  5'- cCGCGuGUCCUgCGCCGG-CU-CCCG-Cg -3'
miRNA:   3'- aGCGU-CAGGA-GCGGCUaGAuGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 8968 0.67 0.829108
Target:  5'- -gGCAGUCCacgCGCUGAUgaGgCCGUg -3'
miRNA:   3'- agCGUCAGGa--GCGGCUAgaUgGGCAg -5'
25207 3' -57.1 NC_005336.1 + 86027 0.67 0.820674
Target:  5'- -gGCGG-CCUCGCUGGccgugCUGCCuuuCGUCa -3'
miRNA:   3'- agCGUCaGGAGCGGCUa----GAUGG---GCAG- -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 24919 0.67 0.815532
Target:  5'- gUCGUAGaaaaauucucccuccUCCUCGCCuuUCcaccggGCCCGUUg -3'
miRNA:   3'- -AGCGUC---------------AGGAGCGGcuAGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 34860 0.67 0.803306
Target:  5'- aUGCAGUCgcgcuccauCUCGCCGAUCUugaugCCGcCg -3'
miRNA:   3'- aGCGUCAG---------GAGCGGCUAGAug---GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 97670 0.67 0.785325
Target:  5'- cCGCGGcgCCUCGg-GGUC-GCCCGUCa -3'
miRNA:   3'- aGCGUCa-GGAGCggCUAGaUGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 54141 0.67 0.785325
Target:  5'- gUCGCAGaaggcguaaaucUCCUCGUCGggCgcguccgGCCCGg- -3'
miRNA:   3'- -AGCGUC------------AGGAGCGGCuaGa------UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 42480 0.67 0.785325
Target:  5'- aCGCGGaggugcCCUCGCCGAgCgugcGCCCGg- -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUaGa---UGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.