miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 46583 0.95 0.019847
Target:  5'- cUCGCAGUCCUCGCCGAUCU-CCaCGUCg -3'
miRNA:   3'- -AGCGUCAGGAGCGGCUAGAuGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 15396 0.75 0.374145
Target:  5'- -aGguGUCCUCGCCGAuauugcuggcgUCgaugcgGCCUGUCa -3'
miRNA:   3'- agCguCAGGAGCGGCU-----------AGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 15052 0.72 0.537373
Target:  5'- cUCGCGGcCCUCGCCGAc--GCCCa-- -3'
miRNA:   3'- -AGCGUCaGGAGCGGCUagaUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 48568 0.72 0.547262
Target:  5'- cCGCAcGUCCcCGCUGAUCgcGCCCGg- -3'
miRNA:   3'- aGCGU-CAGGaGCGGCUAGa-UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 115836 0.72 0.547262
Target:  5'- -aGCAcGUCCUCGCCGG---GCCCGg- -3'
miRNA:   3'- agCGU-CAGGAGCGGCUagaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 128290 0.72 0.547262
Target:  5'- cCGCaAGUCCUCGCUGGUCgagcGCCUa-- -3'
miRNA:   3'- aGCG-UCAGGAGCGGCUAGa---UGGGcag -5'
25207 3' -57.1 NC_005336.1 + 13308 0.71 0.567206
Target:  5'- gCGCGgcGUCCUCGaCCG-UCacGCCCGUCu -3'
miRNA:   3'- aGCGU--CAGGAGC-GGCuAGa-UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 18707 0.71 0.606566
Target:  5'- cUCGCGGUggcggugCCggCGCCGGUCgcGCUCGUCc -3'
miRNA:   3'- -AGCGUCA-------GGa-GCGGCUAGa-UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 42048 0.7 0.617738
Target:  5'- gUGCAcGUCCUCGCCGAggaUCUuCUCGg- -3'
miRNA:   3'- aGCGU-CAGGAGCGGCU---AGAuGGGCag -5'
25207 3' -57.1 NC_005336.1 + 8657 0.7 0.617738
Target:  5'- cUCGUAGUCgUCGUCGGagucgccgccgUCggcCCCGUCg -3'
miRNA:   3'- -AGCGUCAGgAGCGGCU-----------AGau-GGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 80428 0.7 0.627905
Target:  5'- cUGUGGUUCaUCGCCGggCUGCUgGUCa -3'
miRNA:   3'- aGCGUCAGG-AGCGGCuaGAUGGgCAG- -5'
25207 3' -57.1 NC_005336.1 + 68891 0.7 0.627905
Target:  5'- -aGCAcGUCCgugaGCaCGGUCUGCCCGgUCu -3'
miRNA:   3'- agCGU-CAGGag--CG-GCUAGAUGGGC-AG- -5'
25207 3' -57.1 NC_005336.1 + 115923 0.7 0.638075
Target:  5'- cCGCAGgaagugaCCUCGCCGAccacgaagcUCguggagACCUGUCu -3'
miRNA:   3'- aGCGUCa------GGAGCGGCU---------AGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 35085 0.7 0.658395
Target:  5'- aUCGCcuGGUUCUCGCCGAaCcGCCUGg- -3'
miRNA:   3'- -AGCG--UCAGGAGCGGCUaGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 36571 0.7 0.668527
Target:  5'- gUCGCGGgcuugcgcacgCCggCGCCGAUCUGCuuGa- -3'
miRNA:   3'- -AGCGUCa----------GGa-GCGGCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 84669 0.69 0.688696
Target:  5'- gCGCGGUCUgguccuugCGCCGcgCUACCaCGa- -3'
miRNA:   3'- aGCGUCAGGa-------GCGGCuaGAUGG-GCag -5'
25207 3' -57.1 NC_005336.1 + 89725 0.69 0.692709
Target:  5'- cUCGUAGgCCUucugcaucuccgcaaCGCCGAUCU-CCgCGUCg -3'
miRNA:   3'- -AGCGUCaGGA---------------GCGGCUAGAuGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 51556 0.69 0.708679
Target:  5'- cCGUGGacgaggCCUCGCCGAUCUACUUcuUCg -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUAGAUGGGc-AG- -5'
25207 3' -57.1 NC_005336.1 + 29227 0.69 0.718579
Target:  5'- aCGCAGUgCgcCGCCGcgCUGCUCGcCu -3'
miRNA:   3'- aGCGUCAgGa-GCGGCuaGAUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 3977 0.69 0.718579
Target:  5'- -gGCAGccgCCcCGCCGGUCcggGCCCGcCg -3'
miRNA:   3'- agCGUCa--GGaGCGGCUAGa--UGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.