miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 81155 0.69 0.718579
Target:  5'- cUCGUAGUCCgCGUCGGaCacgaGCCCGUUg -3'
miRNA:   3'- -AGCGUCAGGaGCGGCUaGa---UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 34770 0.69 0.728406
Target:  5'- cCGCAGUUCUCGCagaCGAgcaccucCUGCgCGUCc -3'
miRNA:   3'- aGCGUCAGGAGCG---GCUa------GAUGgGCAG- -5'
25207 3' -57.1 NC_005336.1 + 24614 0.69 0.728406
Target:  5'- cCGC-GUUgUCGCCGAUCaUGCCCu-- -3'
miRNA:   3'- aGCGuCAGgAGCGGCUAG-AUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 50367 0.69 0.728406
Target:  5'- -aGCGGUCguuucugUCGCCGcggacGUCUGCCuCGUCg -3'
miRNA:   3'- agCGUCAGg------AGCGGC-----UAGAUGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 6757 0.68 0.73815
Target:  5'- -aGCAcGUCCUCGCgGAUCcACUgGUUc -3'
miRNA:   3'- agCGU-CAGGAGCGgCUAGaUGGgCAG- -5'
25207 3' -57.1 NC_005336.1 + 90257 0.68 0.757357
Target:  5'- -gGCAGcCCUCGUCGAUCaUGCUCu-- -3'
miRNA:   3'- agCGUCaGGAGCGGCUAG-AUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 101700 0.68 0.757357
Target:  5'- cCGCGGUCCUccucgaCGCUGAgccacacgCUucGCUCGUCg -3'
miRNA:   3'- aGCGUCAGGA------GCGGCUa-------GA--UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 14050 0.68 0.757357
Target:  5'- aUGCGGUCCUUGaugaGGUCUaugaGCCCGcCg -3'
miRNA:   3'- aGCGUCAGGAGCgg--CUAGA----UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 5882 0.68 0.766801
Target:  5'- aUGCAGaCCUUGCCGAagaGCgCCGUCc -3'
miRNA:   3'- aGCGUCaGGAGCGGCUagaUG-GGCAG- -5'
25207 3' -57.1 NC_005336.1 + 127730 0.68 0.766801
Target:  5'- cCGCg--CCUCGCUGAUC-GCCCGc- -3'
miRNA:   3'- aGCGucaGGAGCGGCUAGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 113980 0.68 0.7752
Target:  5'- aUCGCGGUgCCUUgcgaGCCGcgCUcgccggaGCUCGUCg -3'
miRNA:   3'- -AGCGUCA-GGAG----CGGCuaGA-------UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 54141 0.67 0.785325
Target:  5'- gUCGCAGaaggcguaaaucUCCUCGUCGggCgcguccgGCCCGg- -3'
miRNA:   3'- -AGCGUC------------AGGAGCGGCuaGa------UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 40930 0.67 0.785325
Target:  5'- cUCGCuGUUUUUGCUGAUCUGCUauuuCGUUc -3'
miRNA:   3'- -AGCGuCAGGAGCGGCUAGAUGG----GCAG- -5'
25207 3' -57.1 NC_005336.1 + 97670 0.67 0.785325
Target:  5'- cCGCGGcgCCUCGg-GGUC-GCCCGUCa -3'
miRNA:   3'- aGCGUCa-GGAGCggCUAGaUGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 42480 0.67 0.785325
Target:  5'- aCGCGGaggugcCCUCGCCGAgCgugcGCCCGg- -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUaGa---UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 34860 0.67 0.803306
Target:  5'- aUGCAGUCgcgcuccauCUCGCCGAUCUugaugCCGcCg -3'
miRNA:   3'- aGCGUCAG---------GAGCGGCUAGAug---GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 24919 0.67 0.815532
Target:  5'- gUCGUAGaaaaauucucccuccUCCUCGCCuuUCcaccggGCCCGUUg -3'
miRNA:   3'- -AGCGUC---------------AGGAGCGGcuAGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 86027 0.67 0.820674
Target:  5'- -gGCGG-CCUCGCUGGccgugCUGCCuuuCGUCa -3'
miRNA:   3'- agCGUCaGGAGCGGCUa----GAUGG---GCAG- -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 8968 0.67 0.829108
Target:  5'- -gGCAGUCCacgCGCUGAUgaGgCCGUg -3'
miRNA:   3'- agCGUCAGGa--GCGGCUAgaUgGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.