Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25207 | 3' | -57.1 | NC_005336.1 | + | 40930 | 0.67 | 0.785325 |
Target: 5'- cUCGCuGUUUUUGCUGAUCUGCUauuuCGUUc -3' miRNA: 3'- -AGCGuCAGGAGCGGCUAGAUGG----GCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 113980 | 0.68 | 0.7752 |
Target: 5'- aUCGCGGUgCCUUgcgaGCCGcgCUcgccggaGCUCGUCg -3' miRNA: 3'- -AGCGUCA-GGAG----CGGCuaGA-------UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 127730 | 0.68 | 0.766801 |
Target: 5'- cCGCg--CCUCGCUGAUC-GCCCGc- -3' miRNA: 3'- aGCGucaGGAGCGGCUAGaUGGGCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 5882 | 0.68 | 0.766801 |
Target: 5'- aUGCAGaCCUUGCCGAagaGCgCCGUCc -3' miRNA: 3'- aGCGUCaGGAGCGGCUagaUG-GGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 101700 | 0.68 | 0.757357 |
Target: 5'- cCGCGGUCCUccucgaCGCUGAgccacacgCUucGCUCGUCg -3' miRNA: 3'- aGCGUCAGGA------GCGGCUa-------GA--UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 90257 | 0.68 | 0.757357 |
Target: 5'- -gGCAGcCCUCGUCGAUCaUGCUCu-- -3' miRNA: 3'- agCGUCaGGAGCGGCUAG-AUGGGcag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 14050 | 0.68 | 0.757357 |
Target: 5'- aUGCGGUCCUUGaugaGGUCUaugaGCCCGcCg -3' miRNA: 3'- aGCGUCAGGAGCgg--CUAGA----UGGGCaG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 6757 | 0.68 | 0.73815 |
Target: 5'- -aGCAcGUCCUCGCgGAUCcACUgGUUc -3' miRNA: 3'- agCGU-CAGGAGCGgCUAGaUGGgCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 34770 | 0.69 | 0.728406 |
Target: 5'- cCGCAGUUCUCGCagaCGAgcaccucCUGCgCGUCc -3' miRNA: 3'- aGCGUCAGGAGCG---GCUa------GAUGgGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 24614 | 0.69 | 0.728406 |
Target: 5'- cCGC-GUUgUCGCCGAUCaUGCCCu-- -3' miRNA: 3'- aGCGuCAGgAGCGGCUAG-AUGGGcag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 50367 | 0.69 | 0.728406 |
Target: 5'- -aGCGGUCguuucugUCGCCGcggacGUCUGCCuCGUCg -3' miRNA: 3'- agCGUCAGg------AGCGGC-----UAGAUGG-GCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 81155 | 0.69 | 0.718579 |
Target: 5'- cUCGUAGUCCgCGUCGGaCacgaGCCCGUUg -3' miRNA: 3'- -AGCGUCAGGaGCGGCUaGa---UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 29227 | 0.69 | 0.718579 |
Target: 5'- aCGCAGUgCgcCGCCGcgCUGCUCGcCu -3' miRNA: 3'- aGCGUCAgGa-GCGGCuaGAUGGGCaG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 3977 | 0.69 | 0.718579 |
Target: 5'- -gGCAGccgCCcCGCCGGUCcggGCCCGcCg -3' miRNA: 3'- agCGUCa--GGaGCGGCUAGa--UGGGCaG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 51556 | 0.69 | 0.708679 |
Target: 5'- cCGUGGacgaggCCUCGCCGAUCUACUUcuUCg -3' miRNA: 3'- aGCGUCa-----GGAGCGGCUAGAUGGGc-AG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 89725 | 0.69 | 0.692709 |
Target: 5'- cUCGUAGgCCUucugcaucuccgcaaCGCCGAUCU-CCgCGUCg -3' miRNA: 3'- -AGCGUCaGGA---------------GCGGCUAGAuGG-GCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 84669 | 0.69 | 0.688696 |
Target: 5'- gCGCGGUCUgguccuugCGCCGcgCUACCaCGa- -3' miRNA: 3'- aGCGUCAGGa-------GCGGCuaGAUGG-GCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 36571 | 0.7 | 0.668527 |
Target: 5'- gUCGCGGgcuugcgcacgCCggCGCCGAUCUGCuuGa- -3' miRNA: 3'- -AGCGUCa----------GGa-GCGGCUAGAUGggCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 35085 | 0.7 | 0.658395 |
Target: 5'- aUCGCcuGGUUCUCGCCGAaCcGCCUGg- -3' miRNA: 3'- -AGCG--UCAGGAGCGGCUaGaUGGGCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 115923 | 0.7 | 0.638075 |
Target: 5'- cCGCAGgaagugaCCUCGCCGAccacgaagcUCguggagACCUGUCu -3' miRNA: 3'- aGCGUCa------GGAGCGGCU---------AGa-----UGGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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