Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25207 | 3' | -57.1 | NC_005336.1 | + | 68891 | 0.7 | 0.627905 |
Target: 5'- -aGCAcGUCCgugaGCaCGGUCUGCCCGgUCu -3' miRNA: 3'- agCGU-CAGGag--CG-GCUAGAUGGGC-AG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 80428 | 0.7 | 0.627905 |
Target: 5'- cUGUGGUUCaUCGCCGggCUGCUgGUCa -3' miRNA: 3'- aGCGUCAGG-AGCGGCuaGAUGGgCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 42048 | 0.7 | 0.617738 |
Target: 5'- gUGCAcGUCCUCGCCGAggaUCUuCUCGg- -3' miRNA: 3'- aGCGU-CAGGAGCGGCU---AGAuGGGCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 8657 | 0.7 | 0.617738 |
Target: 5'- cUCGUAGUCgUCGUCGGagucgccgccgUCggcCCCGUCg -3' miRNA: 3'- -AGCGUCAGgAGCGGCU-----------AGau-GGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 18707 | 0.71 | 0.606566 |
Target: 5'- cUCGCGGUggcggugCCggCGCCGGUCgcGCUCGUCc -3' miRNA: 3'- -AGCGUCA-------GGa-GCGGCUAGa-UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 13308 | 0.71 | 0.567206 |
Target: 5'- gCGCGgcGUCCUCGaCCG-UCacGCCCGUCu -3' miRNA: 3'- aGCGU--CAGGAGC-GGCuAGa-UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 115836 | 0.72 | 0.547262 |
Target: 5'- -aGCAcGUCCUCGCCGG---GCCCGg- -3' miRNA: 3'- agCGU-CAGGAGCGGCUagaUGGGCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 128290 | 0.72 | 0.547262 |
Target: 5'- cCGCaAGUCCUCGCUGGUCgagcGCCUa-- -3' miRNA: 3'- aGCG-UCAGGAGCGGCUAGa---UGGGcag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 48568 | 0.72 | 0.547262 |
Target: 5'- cCGCAcGUCCcCGCUGAUCgcGCCCGg- -3' miRNA: 3'- aGCGU-CAGGaGCGGCUAGa-UGGGCag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 15052 | 0.72 | 0.537373 |
Target: 5'- cUCGCGGcCCUCGCCGAc--GCCCa-- -3' miRNA: 3'- -AGCGUCaGGAGCGGCUagaUGGGcag -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 15396 | 0.75 | 0.374145 |
Target: 5'- -aGguGUCCUCGCCGAuauugcuggcgUCgaugcgGCCUGUCa -3' miRNA: 3'- agCguCAGGAGCGGCU-----------AGa-----UGGGCAG- -5' |
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25207 | 3' | -57.1 | NC_005336.1 | + | 46583 | 0.95 | 0.019847 |
Target: 5'- cUCGCAGUCCUCGCCGAUCU-CCaCGUCg -3' miRNA: 3'- -AGCGUCAGGAGCGGCUAGAuGG-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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