miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 3977 0.69 0.718579
Target:  5'- -gGCAGccgCCcCGCCGGUCcggGCCCGcCg -3'
miRNA:   3'- agCGUCa--GGaGCGGCUAGa--UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 5882 0.68 0.766801
Target:  5'- aUGCAGaCCUUGCCGAagaGCgCCGUCc -3'
miRNA:   3'- aGCGUCaGGAGCGGCUagaUG-GGCAG- -5'
25207 3' -57.1 NC_005336.1 + 6757 0.68 0.73815
Target:  5'- -aGCAcGUCCUCGCgGAUCcACUgGUUc -3'
miRNA:   3'- agCGU-CAGGAGCGgCUAGaUGGgCAG- -5'
25207 3' -57.1 NC_005336.1 + 8657 0.7 0.617738
Target:  5'- cUCGUAGUCgUCGUCGGagucgccgccgUCggcCCCGUCg -3'
miRNA:   3'- -AGCGUCAGgAGCGGCU-----------AGau-GGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 8968 0.67 0.829108
Target:  5'- -gGCAGUCCacgCGCUGAUgaGgCCGUg -3'
miRNA:   3'- agCGUCAGGa--GCGGCUAgaUgGGCAg -5'
25207 3' -57.1 NC_005336.1 + 13308 0.71 0.567206
Target:  5'- gCGCGgcGUCCUCGaCCG-UCacGCCCGUCu -3'
miRNA:   3'- aGCGU--CAGGAGC-GGCuAGa-UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 14050 0.68 0.757357
Target:  5'- aUGCGGUCCUUGaugaGGUCUaugaGCCCGcCg -3'
miRNA:   3'- aGCGUCAGGAGCgg--CUAGA----UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 15052 0.72 0.537373
Target:  5'- cUCGCGGcCCUCGCCGAc--GCCCa-- -3'
miRNA:   3'- -AGCGUCaGGAGCGGCUagaUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 15396 0.75 0.374145
Target:  5'- -aGguGUCCUCGCCGAuauugcuggcgUCgaugcgGCCUGUCa -3'
miRNA:   3'- agCguCAGGAGCGGCU-----------AGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 18707 0.71 0.606566
Target:  5'- cUCGCGGUggcggugCCggCGCCGGUCgcGCUCGUCc -3'
miRNA:   3'- -AGCGUCA-------GGa-GCGGCUAGa-UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 24208 0.66 0.837366
Target:  5'- cCGCAggacGUCCUCaGCaCGGUgUgccagcGCCCGUCu -3'
miRNA:   3'- aGCGU----CAGGAG-CG-GCUAgA------UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 24614 0.69 0.728406
Target:  5'- cCGC-GUUgUCGCCGAUCaUGCCCu-- -3'
miRNA:   3'- aGCGuCAGgAGCGGCUAG-AUGGGcag -5'
25207 3' -57.1 NC_005336.1 + 24919 0.67 0.815532
Target:  5'- gUCGUAGaaaaauucucccuccUCCUCGCCuuUCcaccggGCCCGUUg -3'
miRNA:   3'- -AGCGUC---------------AGGAGCGGcuAGa-----UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 29227 0.69 0.718579
Target:  5'- aCGCAGUgCgcCGCCGcgCUGCUCGcCu -3'
miRNA:   3'- aGCGUCAgGa-GCGGCuaGAUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 34770 0.69 0.728406
Target:  5'- cCGCAGUUCUCGCagaCGAgcaccucCUGCgCGUCc -3'
miRNA:   3'- aGCGUCAGGAGCG---GCUa------GAUGgGCAG- -5'
25207 3' -57.1 NC_005336.1 + 34860 0.67 0.803306
Target:  5'- aUGCAGUCgcgcuccauCUCGCCGAUCUugaugCCGcCg -3'
miRNA:   3'- aGCGUCAG---------GAGCGGCUAGAug---GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 35085 0.7 0.658395
Target:  5'- aUCGCcuGGUUCUCGCCGAaCcGCCUGg- -3'
miRNA:   3'- -AGCG--UCAGGAGCGGCUaGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 36219 0.66 0.861005
Target:  5'- cCGCAGcgCC-CGCaCGGUCUGCuuGa- -3'
miRNA:   3'- aGCGUCa-GGaGCG-GCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 36571 0.7 0.668527
Target:  5'- gUCGCGGgcuugcgcacgCCggCGCCGAUCUGCuuGa- -3'
miRNA:   3'- -AGCGUCa----------GGa-GCGGCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.