miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25207 3' -57.1 NC_005336.1 + 55734 0.66 0.837366
Target:  5'- cCGCGuGUCCUgCGCCGG-CU-CCCG-Cg -3'
miRNA:   3'- aGCGU-CAGGA-GCGGCUaGAuGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 54141 0.67 0.785325
Target:  5'- gUCGCAGaaggcguaaaucUCCUCGUCGggCgcguccgGCCCGg- -3'
miRNA:   3'- -AGCGUC------------AGGAGCGGCuaGa------UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 51556 0.69 0.708679
Target:  5'- cCGUGGacgaggCCUCGCCGAUCUACUUcuUCg -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUAGAUGGGc-AG- -5'
25207 3' -57.1 NC_005336.1 + 50367 0.69 0.728406
Target:  5'- -aGCGGUCguuucugUCGCCGcggacGUCUGCCuCGUCg -3'
miRNA:   3'- agCGUCAGg------AGCGGC-----UAGAUGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 48568 0.72 0.547262
Target:  5'- cCGCAcGUCCcCGCUGAUCgcGCCCGg- -3'
miRNA:   3'- aGCGU-CAGGaGCGGCUAGa-UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 47853 0.66 0.861005
Target:  5'- aCGCAGUCCUucaaggacgUGCCGccCUucACCCG-Ca -3'
miRNA:   3'- aGCGUCAGGA---------GCGGCuaGA--UGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 46583 0.95 0.019847
Target:  5'- cUCGCAGUCCUCGCCGAUCU-CCaCGUCg -3'
miRNA:   3'- -AGCGUCAGGAGCGGCUAGAuGG-GCAG- -5'
25207 3' -57.1 NC_005336.1 + 44772 0.66 0.875756
Target:  5'- cCGC-GUCCaUGaCCGAcugUCUgaACCCGUCg -3'
miRNA:   3'- aGCGuCAGGaGC-GGCU---AGA--UGGGCAG- -5'
25207 3' -57.1 NC_005336.1 + 42480 0.67 0.785325
Target:  5'- aCGCGGaggugcCCUCGCCGAgCgugcGCCCGg- -3'
miRNA:   3'- aGCGUCa-----GGAGCGGCUaGa---UGGGCag -5'
25207 3' -57.1 NC_005336.1 + 42048 0.7 0.617738
Target:  5'- gUGCAcGUCCUCGCCGAggaUCUuCUCGg- -3'
miRNA:   3'- aGCGU-CAGGAGCGGCU---AGAuGGGCag -5'
25207 3' -57.1 NC_005336.1 + 40930 0.67 0.785325
Target:  5'- cUCGCuGUUUUUGCUGAUCUGCUauuuCGUUc -3'
miRNA:   3'- -AGCGuCAGGAGCGGCUAGAUGG----GCAG- -5'
25207 3' -57.1 NC_005336.1 + 39227 0.66 0.868485
Target:  5'- cCGCGGUgCUCGaggaGGUCUACgCCG-Cg -3'
miRNA:   3'- aGCGUCAgGAGCgg--CUAGAUG-GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 37654 0.67 0.820674
Target:  5'- cUCGguGUCCggcggcgcggCGUCGAUgaGCCCG-Cg -3'
miRNA:   3'- -AGCguCAGGa---------GCGGCUAgaUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 36571 0.7 0.668527
Target:  5'- gUCGCGGgcuugcgcacgCCggCGCCGAUCUGCuuGa- -3'
miRNA:   3'- -AGCGUCa----------GGa-GCGGCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 36219 0.66 0.861005
Target:  5'- cCGCAGcgCC-CGCaCGGUCUGCuuGa- -3'
miRNA:   3'- aGCGUCa-GGaGCG-GCUAGAUGggCag -5'
25207 3' -57.1 NC_005336.1 + 35085 0.7 0.658395
Target:  5'- aUCGCcuGGUUCUCGCCGAaCcGCCUGg- -3'
miRNA:   3'- -AGCG--UCAGGAGCGGCUaGaUGGGCag -5'
25207 3' -57.1 NC_005336.1 + 34860 0.67 0.803306
Target:  5'- aUGCAGUCgcgcuccauCUCGCCGAUCUugaugCCGcCg -3'
miRNA:   3'- aGCGUCAG---------GAGCGGCUAGAug---GGCaG- -5'
25207 3' -57.1 NC_005336.1 + 34770 0.69 0.728406
Target:  5'- cCGCAGUUCUCGCagaCGAgcaccucCUGCgCGUCc -3'
miRNA:   3'- aGCGUCAGGAGCG---GCUa------GAUGgGCAG- -5'
25207 3' -57.1 NC_005336.1 + 29227 0.69 0.718579
Target:  5'- aCGCAGUgCgcCGCCGcgCUGCUCGcCu -3'
miRNA:   3'- aGCGUCAgGa-GCGGCuaGAUGGGCaG- -5'
25207 3' -57.1 NC_005336.1 + 24919 0.67 0.815532
Target:  5'- gUCGUAGaaaaauucucccuccUCCUCGCCuuUCcaccggGCCCGUUg -3'
miRNA:   3'- -AGCGUC---------------AGGAGCGGcuAGa-----UGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.